barSeed - Barley Seed Development Database

Probe CUST_12682_PI390587928

Source Contig U35_48413

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12682_PI390587928	Hv_44K_v2	GTGGGCGTCGCGTTTTTGGTCTTCTGTTCTATTTTAAGGCCCGAAGATAATTCATGAATC	-1	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.563	1.524	1.047	0.901	0.317	0.360
Raw	623.919	967.884	563.554	771.881	97.455	116.843

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10053	1389	2e-21	1307 - 1364	97	58 / 60	plus	ABC10053
Harvest35	U35_48413	571	5e-23	11 - 66	100	56 / 56	minus
Harvest35	U35_3701	1462	2e-21	1335 - 1392	97	58 / 60	plus

Contig Sequence (571 bp)

>U35_48413 571 Hv_44K_v2
CTGGNATTNNCATGAATTATCTTCGGGCCTTAAAATAGAACAGAAGACCAAAAACGCGAC
GCCCACGGCACAATATCCCCAAGGGCACATTAATAATGAAGCTTTGTCTAAAAAACCACA
TAAATAATGAAGCTGCTAACAACATAGTTCGTGAATCGAGATACGGGATAGAATCGCAAA
GCTCAGAGCACTGAACCTTGGTCTCTGAAGAGCGAATCCTGAGATAAACGAATCGACAGT
TCCTGATATGTATGCTTGCTGCTCCCTGCTCAGGATGAGCGACGCCAGCCTTCCTAAATC
TCACTGTCCCACAGCTCCTCGTGGGTCTTGTAAACGCTCTGTGGATTAACGGCGAAGTTG
CCTCTGAGCAGCCTAGCATGATGATTGATGAATACCTGCTTAATTTCCGAGAACTTTGCA
AGCACGTCATCTGGAATTGACCAATCATGAACATCAAGGTTTTGTTTTATCCTTTCCTGA
TTCGTGCTCTTTGGTAGCACGCTGTGACCCGTCTGAATGTTCCAGCGCAGAGCCACTTGT
GCAGGTGTCTTGCCGAGTTTCTCGGATATTG

Homology of Contig U35_48413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None