barSeed - Barley Seed Development Database

Probe CUST_12675_PI390587928

Source Contig U35_12488

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12675_PI390587928	Hv_44K_v2	TCAACTGGGAACTGCCCAACGACATGAAGCCGTCGGAGCTCGACATGAGTGATGTCTTCG	356	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77998.1	2032	2e-24	1898 - 1957	100	60 / 60	plus	ABC11969
Harvest21	ABC21443	558	3e-25	357 - 416	100	60 / 60	plus
Harvest35	U35_12488	558	3e-25	357 - 416	100	60 / 60	plus

Contig Sequence (558 bp)

>U35_12488 558 Hv_44K_v2
CGACAAGCTTCCCTTCCTCAAGTGCGTCATCAAGGAGACGCTTCGATTGCACCCGCCCAT
CCCGATGCTCAACCACGAGAATGCCGAGGACTGCGTCGTCGACGGCTACTCCGTGCCCCG
GGGCTCCCGTGTCATTATCAACGTCTTTGCCATCGGCCGTGACATCAACGCGTGGAAGGA
CCCCGACATGTTCCGACCTTCACGGTTCATGGCGGGGGAAGGGGAGGCCGCCGGGGTCGA
CTTCAAGGGCGGGTGCTTTGAGTTCCTGCCATTTGGGTCCGGCCGCCGCTCGTGCCCTGG
TATGGCGCTCGGCTTGTACTCGTTGGAGCTCGCCGTCGCGCAGCTCGCCCATGGGTTCAA
CTGGGAACTGCCCAACGACATGAAGCCGTCGGAGCTCGACATGAGTGATGTCTTCGGCCT
CACCGTTCCTCGCGCCACCAGGCTCTGCGTCGTGCCCACGCCTCGACTTACCTGCTCTTT
GGTTGCTGATGATGATGATGATGATGATGCGCGCCAGGTGTGATGCCATACGCGCATGCA
TCTATTATTTTTTTTTTT

Homology of Contig U35_12488 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36848.1	531	1e-82	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g30590.1	538	2e-94
Arabidopsis v10	AT4G36220.1	520	1e-69	\| Symbols: FAH1, CYP84A1 \| ferulic acid 5-hydroxylase 1 \| chr4:17137584-17139619 REVERSE LENGTH=520