barSeed - Barley Seed Development Database

Probe CUST_12663_PI390587928

Source Contig U35_50730

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12663_PI390587928	Hv_44K_v2	GCCGGTGTATGATGAGGTGGAAATATATATTGGCCTCTATGAATAATACTCCTAGTTGGA	-1	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.277	1.405	0.870	1.572	0.917	1.413
Raw	3.399	44.070	22.724	62.518	13.039	22.503

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_50730	905	1e-23	18 - 78	98	60 / 61	minus

Contig Sequence (905 bp)

>U35_50730 905 Hv_44K_v2
TTTTTTTTTTTTTTTAATCCAACTAGGAGTATTATTCATAGAGGCCAATATATATTTCCA
CCTCATCATACACCNGGCTCCCTTTACCCAATCGGAAAACATGTAGCGGTCGGACGTACA
ACATATTATGCGTTTATTCGTTATTAACACATATGTCTACATACATTCGTATCTAAATAA
ACGGAAGAGAAATAATACGCGTATGTATTGAAGGAGTACTACCGTATAATCTGCGGGGTG
CGTGCGAACAGCAGAACGGTTTATGTATCAGTATCTCTCTCACACACACAAGTCGATCGA
AACAACATCGCACGGGCATTCTGGCATCACGACCGTGTTCCGCACGCCGTAAAGTCGCGT
ACCCAATTTATATCGCGTTGCAGTTGACGTTGGGATCGATCCTGAAGGGCAGGCTGACGC
CGCACCTGCCGGGCAGCCCCGCGGCGCGGCCGAGGGCCGGCCCGCCCGCCGCGGCGGCCG
CGAGGGTCTTGAGGCAGGCGCAGGCGGCGCGGATGTCGGCCTTGGTGCGCGGCAGCGAAA
CGATTCACCGGAGTACCAAATAGCGGACATGTTCCAATAGTACAACGCCACCACTAATGT
TTATGTTTGCCGACAGATCCCAGCAGGATATAAACGACACTACTCCAGCTCCACCACGTT
CCCCGACTCCTTACGGAAGAATGTCCTGACTACGCCTGAGACAAGCTGGCACGGATGTTT
CTTCCCGACATGCACCCGGACTCCCGGCAAACCACGATAAATGGCTTGCTGCTAGGGTTT
TCAGTCCAAGAGAGTAAGGGGGCTAACCTTAAGCAGCATCACTGTGCAGGATCGCCGTCG
GCTTCTCCAGCATCTTGCTCAGAACCAGCAGATGCCTGTGTGGACATTGCCAAGTCATCA
GTTTC

Homology of Contig U35_50730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None