barSeed - Barley Seed Development Database

Probe CUST_12650_PI390587928

Source Contig U35_8996

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12650_PI390587928	Hv_44K_v2	AAAGAAGATTTGGGAGAGAAGCTCCGGCCGTGAGCGACAATGCCGCTCTGCAGCTTCTAC	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55658.3	4453	2e-24	3205 - 3264	100	60 / 60	plus	ABC42998
MLOC	MLOC_55658.8	1516	2e-24	56 - 115	100	60 / 60	plus	None
JLOC1	JLOC1_35935.1	1863	8e-25	187 - 246	100	60 / 60	plus
Harvest35	U35_8996	563	3e-25	11 - 70	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_8996 563 Hv_44K_v2
AATCAAATCAAAAGAAGATTTGGGAGAGAAGCTCCGGCCGTGAGCGACAATGCCGCTCTG
CAGCTTCTACGCCTCCACCTCCCTCCCGGTGGCGAAGCCCCACTCCCTGCCCTCCTCCGC
CAAGCTCCCTTCCACCGCCGCGGCGGCGATCACCACCGTGCAGCCAACGAAGTCGCTGCC
GGCTCCGGCTGTGGCTGCGGCGGCGACCGCCCTGCCAACGACGGCAGAGAACGCAGCGTC
GTTGACACCGGCGGAGGCGCTGTCTCTGCACCTGCCGGAGCTGCCGTCAGCGATGCGCGA
CAAGATCCTGAGCCTGGAGCTGATGGGGGTGGACTACGGGCGCGCGCTGTCCCTGAACCC
GGCGCTCCGGGACGCGGCGCCGGAGTCCATCCACGCGGTGGTCACCTTCCTCCAGTCACG
CGGGCTCCAGTTCAAGGACCTGGGCCGCGTCTTCGGCATGTGCCCGTCGGTCCTCACCGC
CAGCGTCCGCGCCGACCTCCGCCCCGTCTTCGCCTTCCTCACCGACGACCTCGGCGTGCC
GGAGACCGCCTACCGCCGCGTGG

Homology of Contig U35_8996 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57149.1	311	2e-72	protein\|mTERF domain containing protein, expressed
Brachypodium v1_2	Bradi1g06490.1	314	4e-63
Arabidopsis v10	None