barSeed - Barley Seed Development Database

Probe CUST_1264_PI390587928

Source Contig U35_16662

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1264_PI390587928	Hv_44K_v2	ACAAGAAGACGCCGTTGTTTCTGCGTGATGGAAATACGGTTAGCACTTGCCTCATATAAA	1585	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55673.9	2275	7e-23	553 - 609	100	57 / 57	minus	ABC06469 ABC11573
MLOC	MLOC_55673.11	1981	7e-23	299 - 355	100	57 / 57	minus	ABC06469 ABC11573
JLOC1	JLOC1_35946.2	1985	4e-23	1625 - 1681	100	57 / 57	plus
Harvest21	ABC06469	1680	1e-23	1586 - 1642	100	57 / 57	plus	ABC06469
Harvest35	U35_16662	1706	3e-25	1586 - 1645	100	60 / 60	plus

Contig Sequence (1706 bp)

>U35_16662 1706 Hv_44K_v2
CTCGTGCCGGCCAGACCAGCAACCTCAAGAAGAAAAGAAAAAAACAGATCAGCTTCTTCT
CCAAGTCCAATTCCTTCTACCCTTGGGCCGGCCGCCATTGAGAGGCTGCTTCCTCCGCAC
CGTGTCATCTCTGCAGGAAATCGGCTATCGCTCGCCCGGGTGTACTGATCATGTCTGTGA
TGCAATCATCGTATCTTCCTGCTACCCCTGAGTCAATTGCAATGGCTCAGGAAGCTAAGG
ATGCTTCAGAGTCCATTTTAATCCTCTACCGTGTGCTTGAAGACCCGTCTTCTTCTTCAG
ATGCAGTGAGAACAAAAGAAGTTGCCATTACGAATCTGACAAACTATCTCACCATAGAGA
ACAGGGCTGAGGAGCTTAGGAATCTGTTGACCCAACTCAGGCCATTTTTTGCACTGATTC
CCAAGGCAAAGACCGCAAAGATTGTGCGTGGCATCATTGATGCTGTTTCCAAGATACCTG
GAACTTCTGATCTTCAGATCTCACTCTGCAAGGAGATGGTGGAATGGACACGTGCAGAGA
AGCGTACCTTCCTCAGGCAGCGTGTGGAAGCAAGACTAGCTGCCCTTCTTTTGGAAAGTC
AGGAGTACACTGAAGCTCTTACCCTTCTTTCTGGTCTAATCAAGGAAGTGAGGAGGCTGG
ATGACAAGTTGCTTCTTGTTGACATTGACCTTCTGGAGAGCAAACTCCATTTCTCTCTCA
GGAACCTGCCAAAGGCCAAGGCTTCTCTGACTGCTGCAAGAACTGCAGCGAATGCCATTT
ATGTCCCGCCGGCGCAGCAGGGCACTATTGATTTGCAGAGTGGAATCCTTCATGCCGAGG
AGAAGGACTACAAGACCGCCTACAGTTACTTCTTTGAAGCGTTTGAAGGATTTAATGCAC
TGGAGGACCCTAAGGCCATCTTCTGCCTGAAGTACATGCTTCTGTGCAAGATAATGGTTA
ACCAAGCTGATGATGTTGCAGGAGTAATCTCGTCCAAGGCAGGCCTGAAGTATGTTGGTC
CTGATGTGGATGCTATGAAAGCTGTGGCCGATGCCTACTCGAAGCGATCTCTGAAGTACT
TTGAAACTGCTCTTGGTGACTACAAGGCCCAGCTGGAGGAGGATCCTATTGTCCACAGGC
ACCTCTCGTCTCTGTATGATACCCTCCTGGAGCAGAACCTGTGCAGGCTGATTGAAGCCT
ACTCAAGGGTGGAGATTGCACACGTAGCAGAGATGATCGAGTTGCCAATCGAGCATGTGG
AGAAGAAGCTGTCACAGATGATCCTGGACAAGAAATTCGCAGGGACTCTGGATCAGGGCG
CGGGCTGCCTCATCATATTCGAAGACGCCAAGACGGAGGCGATCTTCCCTGCTACGCTGG
AAACAATTTCGAATGTAGGGAAGGTTGTCGAGAGCCTTTACATGAGGTCGGCCAAGATCA
TGGCTTGAGGAGATGTTTTGTTCTCCAGTTAAATCTTACACTTGAGCTCTGCTAGAGTCT
CCAGGACATGAAATCCCCGAGTGTTGCCATTATTTCTTCCTTGCAAATTGTCTTCTGTTA
GCTCTATAAAATGTCTAGCACATGGACAAGAAGACGCCGTTGTTTCTGCGTGATGGAAAT
ACGGTTAGCACTTGCCTCATATAAAAAAACCATTTCCGTTCCAGTGCAGGGTGTAATGTT
CTGTTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16662 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g36700.1	426	protein\|proteasome subunit, putative, expressed
Brachypodium v1_2	Bradi1g59620.1	429
Arabidopsis v10	AT1G29150.1	419	\| Symbols: ATS9, RPN6 \| non-ATPase subunit 9 \| chr1:10181240-10182499 FORWARD LENGTH=419