barSeed - Barley Seed Development Database

Probe CUST_12647_PI390587928

Source Contig U35_8998

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12647_PI390587928	Hv_44K_v2	TTTCAGAAGGGGCTCGCATTTCCAGCCACTGTCATGGAACCTGAGGATGAAGGTCGCCCT	841	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.258	0.215	0.743	2.823	1.752	1.953
Raw	2.901	2.972	20.356	119.701	26.835	31.880

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366446	1839	2e-24	843 - 902	100	60 / 60	plus	None
Harvest21	ABC22751	595	3e-25	480 - 539	100	60 / 60	plus
Harvest35	U35_8998	957	3e-25	842 - 901	100	60 / 60	plus

Contig Sequence (957 bp)

>U35_8998 957 Hv_44K_v2
GAGAAGAAACACACCTTCTTCTCGCCTCCTCGCTCCCCGCCTCCCGCCCGCCATTAATGC
GCCCCTCCTCCTACTGGGGCAAGTGGTCAACCAGCTTAGCACGGGCGACGCCGGCCTTCC
TTCCCGTGATCGGCCAAGAGGCCGACGGGGACAGATAGGAAAGTCAGAGGTGTAGTATAT
ATAATCCGGCCTGCTCGCCGGCCGGGGTGAAGACAGGCTCTGCCGTTCGCCAATGTCTCT
GAGAAAAGCTCCGTCTCCCTTGCCTGAGCCTCCGTCCATCGATCGATCTGCCGCCGGCCA
TGGGGAACTGCTTCGGGAGCAGGATCGGCTCCGACAGCCCCTACAAGACCACCAGCGGCT
CCGCCTCACCTTCTTCCTCCTCAGGGTGGGCGTGGAGGAGGAAGGGCAAGGGGGGCGTGA
GCGTGTCGAGCAGCCGGGTGTCGTCCTCGCCGTCGACCACGGTGCCGCCGACGCCGCGCA
GCGAGGGCGAGATCCTCCAGTCCGCCAACGTCAAGAGCTTCGCCTTCACGGAGCTCAAGA
CGGCCACCCGCAACTTCCGGCCCGACAGCGTGCTCGGCGAGGGCGGCTTCGGGTCCGTCT
TCAAGGGCTGGGTCGACGAGACCACCTTCGCCCCCGCACGGCCCGGCACCGGCATGGTCA
TCGCCGTCAAGAAGCTCAACCAGGAGGGCTTCCAGGGCCACCGCGAGTGGCTGGCTGAAG
TGAACTATCTTGGTCAGTTGTCGCACCCGAATCTTGTCAGGCTCGTCGGGTACTGCCTCG
AGGACGAGCAGCGCCTCCTCGTCTACGAGTTCATGCCGCGAGGGAGCCTCGAGAACCATC
TTTTCAGAAGGGGCTCGCATTTCCAGCCACTGTCATGGAACCTGAGGATGAAGGTCGCCC
TCGGGGCGGCCAAGGGGCTCGCCTTCCTTCACAGCGACAATGCCAAGGGCATCTACC

Homology of Contig U35_8998 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74200.1	409	6e-102	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi2g62290.1	402	3e-107
Arabidopsis v10	AT2G28930.1	423	2e-88	\| Symbols: APK1B, PK1B \| protein kinase 1B \| chr2:12424957-12426565 FORWARD LENGTH=423