barSeed - Barley Seed Development Database

Probe CUST_12643_PI390587928

Source Contig U35_5008

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12643_PI390587928	Hv_44K_v2	GGTTGGAAGGCAAATGCATAGACTAGTATTGCGACCCTTAATTAATCATTAGTTTTGATA	1643	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.394	1.187	1.326	1.257	1.144	0.832
Raw	5.028	29.495	27.405	40.368	13.278	10.540

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56451.2	4015	2e-24	3466 - 3525	100	60 / 60	plus	ABC10779
JLOC1	JLOC1_36508.1	2163	8e-25	1932 - 1991	100	60 / 60	plus
Harvest21	ABC10779	1732	3e-25	1644 - 1703	100	60 / 60	plus	ABC10779
Harvest35	U35_5008	1732	3e-25	1644 - 1703	100	60 / 60	plus

Contig Sequence (1732 bp)

>U35_5008 1732 Hv_44K_v2
CATGGCTCTCGCCCTTCGAGCGCCCCGCTTTCAGCCGCTTCCCGCCTCCATTCCCGCGAC
CTCCACCGCTTTCGCCAGCACCGCGAGGCATTCCTCCTCCGCCGTCGCCATCTGCGCCGC
CGCGTCGCCGTTCACCGAGGCCACGTCCTCCTCGAGATACCGCCGCGACGCCTGGTCCTA
CACTGCCCAAGACTCCTCCTCTCCCTCGTCCGCCGCCGCCGCCGCTGCTGCTGCGGCCTC
GGGACGCCGGGACGACGAGATCGCTCTGCAGCTCCCGGAGCTGCGGAGGCTTCTGAAGGC
TCTCAGGGCGTCCAGAGGGAAAGGGCTGGAGGGGAAGGACGGCGGCGGTGGGCCCGGGAG
GGTGGCGCTGGTGGGGACGGGGCCCGGGGACCCGGAGCTCCTGACGCTCAAGGCGGTTCG
GGCCATCGAGGCAGCGGACCTAGTGCTGTACGATCGCCTCGTGTCCAACGAGGTGCTCGA
TTTGGTCGCGGAGGGCGCCAGGCTACTCTACGTCGGCAAGACGGCTGGATACCACAGTCG
CACTCAGGAAGAAATTCATGAGTTGCTCCTGAGCTTTGCCGAGGCTGGTGCCAATGTGGT
GCGGTTGAAAGGCGGCGATCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTTCT
ACAGCAACAAGGAATTAAAGTTGAAGTTATTCCAGGAATTACCTCTGCTTCAGGAATTGC
AGCTGAACTTGGTATTCCGCTAACCCATCGGGGTGTCGCTACCAGTGTCAGATTTTTAAC
CGGGCACTCTAGAAATGGTGGGACGGATCCTCTACATGTGGCAGAGAATGCAGCCGACCC
AGACACAACTTTGGTTGTGTATATGGGTTTGTCAACATTACCATCACTAGCTCCCAAGTT
AATGAAGCACGGTCTTCCAGCAGATACTCCTGCTGTTGCAGTAGAGCGTGGGACTACCCC
CCAACAGCGAATGGTATTTGCAATGTTGAAGGATCTTGTGAATGAGGTCCACTCGGCAGA
TCTGGTTTCTCCAACTCTGATAATTATCGGCAAGGTGGTGGCCTTGTCACCCCTATGGGT
TGAGTCATCTAAACAAGATGCGCTTAATAATGAGAACTCGTCGCAACTGAGTCCAACAAT
TTTTCCTGTATAAAGTACAAGGGATGTTAATGAACGTCACGCTTTTGGAACATTTCCAAA
TTGAGATCTAAGGCTATATGATCTGGTTTTAGGTTAGGACATGCAAACACAGGGCATAGT
GAATCTGGACAAGAGAGCAAACACAGGGAGCATATATTTTGAATAATATTGCAGTTGCAG
AAGGCGTACATAAAACCACAGAGAACAAGAGTTCAGTTTAACCGGCGGCGACAGTCCATG
ATTTGGCTTAATCTACTGAACTGAGCATAGTTTAGTTTTGGTCTTGGACCATATGTATAT
CTTTCTTGAATCAAAGGTAGGATCTGTTTTGTTGTCTCTGTCGCATTACTTTGTTTTGGG
GCTACTCTTGAAACATGTTGAGCATTGTATGCCAGTATTCTGTCAGGCTCATTTGTTTGG
TTTAATAACGAATTTTGAACAAGTTCCACACATGATCAGTCGAGCCGATTCTCCCTATTC
ATGGACTAGTCTCTGAAGGTTTCGGTTGGAAGGCAAATGCATAGACTAGTATTGCGACCC
TTAATTAATCATTAGTTTTGATATATTTGAAACTAACACTAGTATGAAGTAG

Homology of Contig U35_5008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g44050.1	385	4e-174	protein\|siroheme synthase, putative, expressed
Brachypodium v1_2	Bradi2g44360.1	392	8e-172
Arabidopsis v10	AT5G40850.1	369	2e-135	\| Symbols: UPM1 \| urophorphyrin methylase 1 \| chr5:16367205-16368724 FORWARD LENGTH=369