barSeed - Barley Seed Development Database

Probe CUST_12642_PI390587928

Source Contig U35_5009

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12642_PI390587928	Hv_44K_v2	TGGCCAATTTTGTTTCGTCAGGTTTTGAGCTTTTGGAGTTATTGACATTGGTTTTGACTA	654	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.955	1.769	1.149	0.768	0.309	0.305
Raw	7360.170	10565.157	5979.143	6266.627	886.878	956.554

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12627.1	1385	8e-25	1164 - 1223	100	60 / 60	plus
Harvest21	ABC18450	732	3e-25	655 - 714	100	60 / 60	plus	ABC18450
Harvest35	U35_5009	797	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (797 bp)

>U35_5009 797 Hv_44K_v2
CGGAAGTTCAATGCAATAGAGGTCCCTAGGAAACTGCAACCTTTACTTCCTTTTAAATCA
AAGCCGAAGGATAGACCTAAGGGCAAGAAAGGATCAGCTGTAGACATGATACCAGAGATT
ATGAATATTGGTGAGAAGAAGATACATGGAGCTCTTCAACAGTTGCATCTGTTAAAGCAT
GAAAAGACGAGGAAGGAGAAAATCAAGCGTGGGCTGCAGAAGAAAGCACACGAGGTGCAG
AAAGCCAAGACAGATGAGATAACGAGGAAGCGGCAGAGGGAAGATAGGCGTGAGAGATAC
AGGGAAGAAGATAAGAAAAAGAAGCGTGCCCGAAGGTAGGCGAGGAAGGTACAAGGGTCT
GTCTCTGCACTGTCGTTCCCGTCAGATGAAGCACCAGCCAGGACGCACTGTCTACCCAAG
ACATGTCACCCCACTGGCACGGCTGGCAGCAGACGACTCATGAACCTCTAGTACGGATTA
GTTGGAGATGCATGTGATATTGCTAGTCACTCTCGCAAAAGAGAAAGATGTGGTAACTAG
GGCCGGTGACACCATGTTTAACCGATAAGCGTATACCTCCGTGCTTATGTAGATTTTGTC
ATCCATGAGTGACCAGCTTACATCGTATGTTGAAAAGTTGAGAGACAGAACAGTTGGCCA
ATTTTGTTTCGTCAGGTTTTGAGCTTTTGGAGTTATTGACATTGGTTTTGACTAGAAAAA
AAAAAAAAAAAATTGCAACCAAAATGATGGTTTAAAATCTGATAATATATAGTTGCAGCC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_5009 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None