barSeed - Barley Seed Development Database

Probe CUST_12637_PI390587928

Source Contig U35_5014

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12637_PI390587928	Hv_44K_v2	TAAAGGCCTTATGAGCGGTCAGCAGTTAGTTGAAGGCTTGAAGCTGATCCTGAGGTATTA	657	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.186	1.440	1.771	1.673	0.506	0.792
Raw	140.120	274.034	284.861	460.155	44.326	77.729

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69359.1	2406	2e-24	773 - 832	100	60 / 60	plus	ABC14699 ABC43345
MLOC	MLOC_69359.2	1884	2e-24	773 - 832	100	60 / 60	plus	ABC14699
MLOC	MLOC_69359.3	3403	2e-24	773 - 832	100	60 / 60	plus	ABC14699 ABC43345
JLOC1	JLOC1_45948.6	2885	8e-25	698 - 757	100	60 / 60	plus
JLOC1	JLOC1_45948.5	1694	8e-25	698 - 757	100	60 / 60	plus
JLOC1	JLOC1_45948.4	1841	8e-25	706 - 765	100	60 / 60	plus
JLOC1	JLOC1_45948.2	2257	8e-25	739 - 798	100	60 / 60	plus
JLOC1	JLOC1_45948.1	3307	8e-25	748 - 807	100	60 / 60	plus
Harvest35	U35_5014	1243	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (1243 bp)

>U35_5014 1243 Hv_44K_v2
GCTGCAGGATAGACTGGCGGGTTATCAATAGATGTATACGAAAATCCTGATGCTGGTCTT
CTCTGCTTTGGAGTCATTTCATGTGGCGTTAGCAATCATGACCAACCGTGATATGCCAAA
GCAGCTGTATCAAGAAGAGACACCAGATAATGGATTGTACGGCAGAGCTATTGGCAAGCC
AGCTGGAAATGTAACTCATGATGGAGATGAAGATGAAGAAGACATGTAAAATGAACCAGC
TAGCAACTGCTTCTGATTTAAGTGCGAGGAAATCTCCTGCAAACAAAATTTCTGCTTCTA
TATATTCTGCTGTGCGGAAACTATGCTTGATATTGGACTTCCTTAAAGAACTCCTCACAA
CGGTGGGTCAGATAGTTGTATCCTGCAATTAGCGAAAACCTGCTTTTCTACATTCTTGGT
GGACAATGTGCAGCCTTTTACAACTGAAGGCAATCGGTGTTATTTGCACGGTTTTTTCAT
CATACACACAACATAGGAGTTACTTGGTTGATGAAACACTTAATCTTGTCCGCAAGTTAC
AGTTTTCCAAAAATGCTATTAGAACATCGCTAGTTGGAAGGCATCCTAATTCACTTGGTT
CAGTGCAAATGTTCACTTGGAAGGCTAGCTTGAGAGAAAATTCTCCTGTAATAAGAGTAA
AGGCCTTATGAGCGGTCAGCAGTTAGTTGAAGGCTTGAAGCTGATCCTGAGGTATTAGGT
GACGAACGTGTCCAATCTGCTGTTGAAGGAAGTCTTGTGATTCAGCTATTTCTGTTCGTG
AAGCTGCACTCGAGCTTGTTGGAAGGCATATTGCTTCACACCCTGATCCTGAAGTATATT
GAAAAAGTCACTGAACGGACAAAGGACACTGGAGTAAGTGTTCGCAAACGTGTGATCAAT
AGTATCCGTGATCTTTGTGCTTCAAGTCGGAATGCGGATACAAGATATGCCTTTGTGGAG
ATTATTTCGTGTGTTAATGACGAGGAGTCAAGTGTGCAGGTAAAAGTTTATGTATCAAAC
CATTAACTGGTGCTCCTGAGTCATGGCACCACATTATCATAGCAGACTTGATATTGTACT
AGAGATGTTTCATTTATTGTTGTTTTCTTCAGTGCGGTGTATGTTGGTGCATGAACTGAA
ACAATCTGTATAGCTGGAAAAAAATAGTGGAAGTTAGCTAGTTCCTCTGTGAAATCCCCT
TACATTTGCAAAATAAAAAATTATCCTTATCAAAAAAAAAAAA

Homology of Contig U35_5014 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None