barSeed - Barley Seed Development Database

Probe CUST_12626_PI390587928

Source Contig U35_5025

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12626_PI390587928	Hv_44K_v2	CCCCTTGAACTGTCTCTCAAGGATGAAAAATGAATAGAAGGCGGGTACAAGCTGAAAAAA	625	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.066	0.157	0.920	2.353	1.442	1.477
Raw	29.811	108.304	561.451	2050.384	496.115	541.878

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_2975.1	2051	1e-22	1702 - 1757	100	56 / 56	plus
Harvest21	ABC10435	696	3e-25	12 - 71	100	60 / 60	minus	ABC10435
Harvest35	U35_5025	696	3e-25	626 - 685	100	60 / 60	plus

Contig Sequence (696 bp)

>U35_5025 696 Hv_44K_v2
CCTCAGCAACGGCACCACCGGCACGGGCGGCGGCACGGCGGCTACGTCGCCGGAGATCGA
CGTCCACGGCTTCGCCTTCAACAGCTCCGTGCTCTGGGACCCCGAGCGCTGGGGCCGCTA
CCCGACCTCCGAGCCCGACAAGTCCCAGGACTCGATGAGGTTTGTGCAGCAAGTGGTGGC
GGAGGATTATAGCAAGGTGAAGGGCATTCCTCCAGATTGTCTGGAGATCATGGTATGGGG
CGTCGACGCGGCGCCGGCGACGGCTCCGTCTTCCTCGGGGCAAACTCCGGGGAATAAGAG
GAGGAGGTAGGAGCGAGAGCTGTAGAAGAGAAGATCGTCGGGTCGATGAGCCGAGCAAGC
TGCTGCCTATACTGTACATGCAGGGATCGCACCAGTAAGGTGTTGGTGTTCCTACTAGCT
GCAAACATAAGAACTTTTTTGGTTTTTCGTTATAGGGGATGGGTCGCCAAGTATCCTCCC
ACCCAATATCGCCATATTGTACATCTTCGTTACCTTTTTTCTTCTTCAACAAATTGTGAT
ATATGCATACTTTATTCTCTTTTTCTTTTCGTTTCTTTTCTTTCCTTTGTTTTTGTTTTC
AGAGGGTTTAGGTGATTACATAACACCCCTTGAACTGTCTCTCAAGGATGAAAAATGAAT
AGAAGGCGGGTACAAGCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None