barSeed - Barley Seed Development Database

Probe CUST_12624_PI390587928

Source Contig U35_5027

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12624_PI390587928	Hv_44K_v2	ATTACTGATCCTGTTTCCAGAATTGGGAAGCCAGCATGCATTTCTGCATCAATTGCATGG	560	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58977.1	1474	2e-24	805 - 864	100	60 / 60	minus	ABC25981
JLOC1	JLOC1_38348.1	1541	8e-25	626 - 685	100	60 / 60	plus
Harvest21	ABC11395	626	3e-25	561 - 620	100	60 / 60	plus
Harvest35	U35_5027	626	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_5027 626 Hv_44K_v2
AACAACCGGGTCCGCGCAAAACTCTGAGCAGGCGAACGCTCTGGCCGCCGCCGCCGACGA
CGACGACGAGGAGCACGACATCTATTCTCAGGTGAGGAAGGGAGGCGGGAATGGCGGATC
AGAAGGTGGCTCAGTTGGGGCCTGGAGCTGCGTGCTGCGGCTGGAACCACTGCGGCCGGC
GCCTAGCCGCCGGCGCCGTCGATGGGTCCGTTTCCGTCTACGATTCTCAGCCGTCTCCCT
CCTCCAAGTGGCAGGCCCATGAGCATGCCGTAGTGGCTGTCGTCTGGCTTCCTCCGGACT
ACGGGGATGCTATAGCTTGTGTCTGTGCCGACGGTACGCTGTCTTTGTGGGAGGAGATTG
CAGAAGATGATCAACTTCCAATCTGGAGAAAATGTAAATTCTTTGAGGGTGGCAGTTCCC
ACATCCTAAATGTACAGTTTGGTTTGCTGCTGTCAAGTCTGAAAATGGTTGTTGCATACT
CAGATGGTCAGGTGAAAGTCTATGAACTTTTGGATTCATTGGAATTGGACAAGTGGCAGC
TTCAGGCAGAGCTACAGAATATTACTGATCCTGTTTCCAGAATTGGGAAGCCAGCATGCA
TTTCTGCATCAATTGCATGGAGTCCT

Homology of Contig U35_5027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43250.1	325	5e-106	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g43780.2	250	8e-116
Arabidopsis v10	AT1G64350.1	326	4e-58	\| Symbols: SEH1H \| Transducin/WD40 repeat-like superfamily protein \| chr1:23881582-23883073 FORWARD LENGTH=326