barSeed - Barley Seed Development Database

Probe CUST_1261_PI390587928

Source Contig U35_16664

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1261_PI390587928	Hv_44K_v2	ATTCGATGACACTGTAACCTGGTAATACTCTACCAATTAAGGTCTTGAATTGCATGTAAA	684	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.357	1.332	1.020	0.977	0.449	0.473
Raw	5731.147	8718.667	5934.710	9104.563	1423.093	1659.283

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361211	900	7e-23	739 - 795	100	57 / 57	plus	ABC06226 ABC31649
MLOC	AK249257.1	676	7e-23	612 - 668	100	57 / 57	plus	ABC06226 ABC31649
JLOC1	JLOC1_16085.1	693	4e-23	427 - 483	100	57 / 57	plus
Harvest21	ABC06226	766	1e-23	685 - 741	100	57 / 57	plus	ABC06226
Harvest35	U35_16664	758	3e-25	685 - 744	100	60 / 60	plus

Contig Sequence (758 bp)

>U35_16664 758 Hv_44K_v2
CCAACAGAGAGCAACACCATCCAATCTTCTTCCGTCCCGTGCTCGTAGTAGGTGGAGTAG
GGTTTTAGCCATGGCGTGGAGTGCCGCCGCCGCCGTCTCCAGGTTCGCCGCCTCCCCGGC
CGCCGAGATCCGCCTGCCCTTCTCAGCAGCAGCAGCCGCCTCCGTCTCCTTCGCCGGGCG
CCGCCGCTTCGGCCCCGTCGCCGCGTCCCTCGCCACCTCCGCCACCGTTCAAAAGGAGGC
TGTTCAGACGGAGAAGGCGCCAGCAGCACTAGGCCCCTACTCTCAGGCGATAAAAGCAAA
CAATCTTGTGTTTGTCTCTGGCGTTCTAGGCCTAAATCCTGAGACAGGGAAGTTTGTCTC
TGAAAGCGTGGAGGAGCAAACTGAGCAGGTTATGAAGAACATGGGTGAAATATTGAAAGC
AAGTGGTGCTAGCTACTCATCAGTTGTCAAGACAACAATCATGTTAGCCGATCTACAGGA
TTTCAAGAACGTGAATGAGATTTACGCTAAATATTTTCCAGCCCCTGCGCCAGCACGCTC
AACCTACCAAGTCGCAGCTCTGCCACTCAACGCCAGGATCGAGATCGAGTGCATTGCTGC
CCTCTAGTTACCTCGTGTCTAACCATCAAAACCTCAATAAGCACTCCATGCCCCTTGCAG
CTGGCCGCTATTCTGTAGTGCACTATTCGATGACACTGTAACCTGGTAATACTCTACCAA
TTAAGGTCTTGAATTGCATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16664 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g33240.1	181	3e-71	protein\|endoribonuclease, putative, expressed
Brachypodium v1_2	Bradi1g26277.1	178	7e-75
Arabidopsis v10	AT3G20390.1	187	3e-64	endoribonuclease L-PSP family protein \| chr3:7110227-7111695 REVERSE LENGTH=187