barSeed - Barley Seed Development Database

Probe CUST_12616_PI390587928

Source Contig U35_5035

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12616_PI390587928	Hv_44K_v2	AGACATGACCCAAGTTTGTAATGGATTCAGCATTTTATAACTCAAAAAATGAATTGGCGC	857	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.736	1.864	0.859	1.040	0.504	0.829
Raw	764.123	806.190	327.789	658.881	104.611	188.370

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75827.3	1949	2e-24	1889 - 1948	100	60 / 60	plus	ABC12038
MLOC	MLOC_75827.6	1744	6e-24	1686 - 1744	100	59 / 59	plus	ABC12038
JLOC1	JLOC1_50579.2	1819	8e-25	1686 - 1745	100	60 / 60	plus
JLOC1	JLOC1_50579.1	1845	8e-25	1712 - 1771	100	60 / 60	plus
Harvest21	ABC12038	944	3e-25	858 - 917	100	60 / 60	plus	ABC12038
Harvest35	U35_5035	944	3e-25	858 - 917	100	60 / 60	plus

Contig Sequence (944 bp)

>U35_5035 944 Hv_44K_v2
AGGAATTCGGACGAGGATATCTTCTGGACTTGTATAGGTGAGGCTGAGAGGATCCTGAGT
TGCAAGGGGAGAATCTTCGCCATGGACGATGAGCCCGACGTGCCGAGGCTGTGGTTGCCG
GACCAGGACGCGCCGGGCCTCGCCATGGCGAGGGCTTTTGGAGACTTCTGCCTCAAGAAC
CATGGGCTCATCTGCACACCCGAAGTGTACTACAGGAAGCTGTCTGAAAGGGATGACTTC
TTGGTGCTTGCCACGGATGGGATTTGGGACGTGCTATCCAACAAGGAGGTGGTTAAGATT
GTCTCGTCGGCCTCCGACCGCTCAAAGGCGGCAAAGCAGCTCGTGGACCGGGCGGTTCGC
GCGTGGCGCCGCAAGTTCCCGACGTCGATGGTCGATGATTGCGCCGCCGTCTGCCTCTTC
CTGAAGCCAGCAGCCATTTCATGTGAGGAAGACAGCACGACCAAGCCGCCTCAGGCACCC
GTGCTGTCGTTCACCGGGAGTTTCCGCAAGGCTCTGAGCGGCGGCGGTGAGGCGGAGGAG
GGGACGGCGGTGTGGAGGGCGCTGGAGGGGGTGGCTCGGGTGAACTCGGTGATCCGGCTT
CCCAGGATGCTGAGCCGGCGGTGGCGGTCGGCGTCCATGGATGAGAACAACGACCACGAA
TCATCCAAGGTTGATTGACTGATCGATTCATGCTCATGCATTGCCAAACTTAAAAGGATA
ATGTTTCAGAACTTGATTGATAGTTTCATACATCGTGTTCGCGCATTCAGGCTGTTCAGA
TTGAACATTAATTCGGTTGGCATGTACGTACGTACGCTTGTTGGGTTTGGTGCGTGTTGT
GGTACCGATTAGACAAGAGACATGACCCAAGTTTGTAATGGATTCAGCATTTTATAACTC
AAAAAATGAATTGGCGCCAGTTTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5035 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g01770.1	477	1e-109	protein\|protein phosphatase 2c, putative, expressed
Brachypodium v1_2	Bradi4g44750.1	437	3e-116
Arabidopsis v10	AT1G79630.1	504	4e-64	Protein phosphatase 2C family protein \| chr1:29962931-29965169 REVERSE LENGTH=504