barSeed - Barley Seed Development Database

Probe CUST_12605_PI390587928

Source Contig U35_5046

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12605_PI390587928	Hv_44K_v2	GAGATCCTTGTATGGACACCGTATCACTGATCATTTACACTTTTACCAATAATAGTTTAG	1558	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.119	1.329	1.276	1.067	0.395	0.351
Raw	505.229	941.990	790.341	1035.333	135.508	130.396

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60940.2	1188	7e-23	1094 - 1153	98	59 / 60	plus	ABC13251
MLOC	MLOC_60940.3	1907	7e-23	1813 - 1872	98	59 / 60	plus	ABC13251
JLOC1	JLOC1_39774.5	2032	4e-23	1820 - 1879	98	59 / 60	plus
JLOC1	JLOC1_39774.4	3251	4e-23	3039 - 3098	98	59 / 60	plus
JLOC1	JLOC1_39774.3	2215	4e-23	2003 - 2062	98	59 / 60	plus
JLOC1	JLOC1_39774.2	3305	4e-23	3093 - 3152	98	59 / 60	plus
JLOC1	JLOC1_39774.1	2332	4e-23	2120 - 2179	98	59 / 60	plus
Harvest35	U35_5046	1635	3e-25	1559 - 1618	100	60 / 60	plus

Contig Sequence (1635 bp)

>U35_5046 1635 Hv_44K_v2
CCACTCCCAAATCATCCATTCCTCCCGGGCCTGTAAAGCCCTAGCGCGCACCATCCGCCG
CGAGCCACCTCGCCCCCTCCACTTCCGGCCGCCGCGACCCTCCACTCCCGGCCGTCGCGA
CCCTCCTCGGACCATCCACTCCCGGCCGTCGCGACCCTCCTCGGACCATCCACTCCACTC
CCGGCCGCCGCGACCCCCTCGCCCCTCTCCACTCCCGGGCGCTCGTCACGGGAACCAACC
TCGGGCAGTTCCCCCAGGCGTTCGTCATCGTCCCCGGTGTCTCGACTGCGGCAGGGCTAC
TGGCGTCCGCAGACCCAATCCCCTCCATGACCTTCGCCTGAATCTCCCGGAGCACCCGTC
CCCTCCCCGTCTTCTCCAAGCGCAGAGGGCAGAGAGAAGATGGGGGTGTTCGCTGAGACC
GTCACGGCCCTCGTCTGGATGGTCGGCCTGTTTCCCACTGTTGCCCTCGCCGTGTTCACG
GTGACCAATATGGCGCCAGTATCCTTGCAGTTTTTCCCACCCTCACCTGCTGGTCTTCCT
TCGGCCCCGCTGCCTCCGTATCCTGCGGTTCCTTTGCCCCAGCTTCCTAGCCCTCAATCT
CCCATGCCGCCTTCACCACTGCTGCTTGACTCCAGCATTGTCTGTGCCCCACCTCATGCG
GTTATTCCTTCACCTCCAGTCTCTGCCGCTGCCGCTAGCCTGGTGTGCCCAGCGTCACCT
GCTCCTTTGACAGATTTGACTGCTGATCAGCTGAAATTTAAGATCGCGTCATGGGAGAGA
TTGGCATTAATGTTCCTATCCATCACTTTCATCTTGATAGGCATAGTGCGCCCACAAGTG
GAAGCGGCTGCCAAGGCTGAGGCAAGGGCTTCATCTGAAGAGGACAAGGCATATAAAGAG
GCAAAGGAAGCGTTGATTGAGGCTATGAATGCTGTTGATGCTGCCACCAAAGAAATCGAC
ACTGCAGTTGATAAGTGTATCAGTGACTTGCAGATGCGCGTATCCGATTTGATCACAAAT
GACCATCTCTTTTCTCTGATGTTTGGCATCAATAAGGTCATTGCGAGGAAGCATAAGGTC
CTGGAGAAAGAGGCGCTTTTTACCGCTCCATTGAGCTCCAGATGGGGAAACCAGCCAGGG
CTGATACTATCATGTGCTTCTCTCTACTTGCCATACTCGCTGCAGGACTGCATGGCTATT
ATCTCCGCCTCGCCAATTTCGAGGATTGATTATGGAGAGGCTCAACTCAGCAGGATCGCC
GATGGAAGCAGAATCCACAACAGGGTCATGTGGAACTTCATTTGACAGATGGAGAAGCTG
GAATAGGATCGCCGATGGAAGCAGAATCCGCACCAGGGTCATGTGGAACTTCATTTGACA
GATGGAGAAGCTGGAATAGGATCGCCGATGGAAGCAGAATCCGCACCAGGGTCATATGGA
ACTGTAACTATGTGCATCATGTATCGTTTTGCATGAAAGAAATCTTTGTTTAGGCGAACA
CCTTAATTGGTACTCCCATAATGTAAGACCATTTTGCAGGCTTTGCTATGCTGCAGCTGA
GATCCTTGTATGGACACCGTATCACTGATCATTTACACTTTTACCAATAATAGTTTAGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_5046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None