barSeed - Barley Seed Development Database

Probe CUST_12600_PI390587928

Source Contig U35_5051

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12600_PI390587928	Hv_44K_v2	GAACGAGGCCTTGTGATCTTACCTGTAAATGCTTCCTTTTATAGCTATACAGTATTATCT	883	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.225	0.308	0.726	1.836	1.440	1.989
Raw	129.719	289.047	589.304	2374.882	637.950	966.215

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70906.4	970	2e-24	886 - 945	100	60 / 60	plus	ABC10924
MLOC	MLOC_70906.2	1092	2e-24	936 - 995	100	60 / 60	plus	ABC10924
MLOC	MLOC_70906.3	1985	2e-24	1816 - 1875	100	60 / 60	plus	ABC10924
JLOC1	JLOC1_47078.3	1910	8e-25	1436 - 1495	100	60 / 60	plus
JLOC1	JLOC1_47078.2	1438	8e-25	964 - 1023	100	60 / 60	plus
JLOC1	JLOC1_47078.1	1447	8e-25	973 - 1032	100	60 / 60	plus
Harvest21	ABC10924	1031	3e-25	871 - 930	100	60 / 60	plus	ABC10924
Harvest35	U35_5051	1044	3e-25	884 - 943	100	60 / 60	plus

Contig Sequence (1044 bp)

>U35_5051 1044 Hv_44K_v2
ATTTCCCAACCAACCAACCAACCAACCAAGTACCAACAGCCGCCCGTGGCCGATCCATGG
CGACGGCGTCGCGGCTGCTGCCGCCCTTCCCCCCTCCAGCGGCCCCGACATCCCGCCACG
CAACTCTCCGCGCCGCTCCTCGCAGCTGCAGCCTCGCCATCCCGAGCCTCCGGTGCCGCG
CCTCCGCCCCAGCGGCCGTTGACGCTGCTGGCGCGCCGCTGCTGCTGGAGGACCGCGCCG
GCACGGTGTCCATCCGAGAGTTTGTCACGCTCGATGAGCTCCACGCCGCCGTGCGCCTCC
GCGTGCGCACCTTCTACGAGTACGCCCGCGACACTGTCGGGGCCGAGTTCTATTAGGATC
ACAGGAAAGGTCTGGCAGAGAGGGAATATGAAGCATTACAAAATCGGATTTCTGGGAATA
TGATTAATTTTCGGAGAGTCTCTTGTATAAATGGGACAGTGCCACTGTTGCCATCGTTGA
TGCCAGCAGAGGAGCTTTGTTCAACATGCAAGTTTGTTGAAGATGGGGAAGAGAGAATAG
TAGTTGGTAGTTTAGACCTGAATCAGTGCCTCTGGCTACCAGATGAACTGACTGGAAAGA
GGCCAGGGGTAACTGAATCAAGCCATACACGGGCATATCTGAGCAACGTATGTGTTGCTA
AGGAGCTCCAAAGATGCGGACTGGGCTATGCATTGGTTGACAAGTCTAAGAAGCTTGCTC
GTCAATGGGGCATAACAGATTTGTATGTCCATGTTGCCATCAACAACGAGGCGGCACAAA
AACTGTACATCAAGAGTGGATTTGTGTATGAAAGTGAGGAGCCTGCCCAGCAGGCTAGGC
ATCTTGGGCGTCCTCGAAGGCTTCTTCTTTGGCTTGATATGAAGAACGAGGCCTTGTGAT
CTTACCTGTAAATGCTTCCTTTTATAGCTATACAGTATTATCTATATATAATTCCGATTT
TACTGCCCATTTCAAGTAGTAGTATTTTTTTCCTTGTGGAAAGAAATACAATTCCGAAAA
TTTAAATTCAAAAAAAAAAAAAAA

Homology of Contig U35_5051 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g16010.1	292	1e-131	protein\|acetyltransferase, GNAT family, putative, expressed
Brachypodium v1_2	Bradi3g19180.1	277	2e-148
Arabidopsis v10	AT4G28030.1	274	3e-77	Acyl-CoA N-acyltransferases (NAT) superfamily protein \| chr4:13937748-13939131 REVERSE LENGTH=274