barSeed - Barley Seed Development Database

Probe CUST_1259_PI390587928

Source Contig U35_16665

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1259_PI390587928	Hv_44K_v2	CATACTGGAGTTTATACGGTGGACAGAACATAATCTTATTCTTGTGGGATATCAATAATG	1531	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.550	3.159	1.139	0.796	0.409	0.541
Raw	836.762	1176.171	370.097	410.021	73.755	105.112

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364547	1695	2e-24	1530 - 1589	100	60 / 60	plus	ABC06769 ABC07815
MLOC	MLOC_64925.1	4021	7e-23	3613 - 3672	98	59 / 60	plus	ABC07815
JLOC1	JLOC1_42670.2	2992	4e-23	2762 - 2821	98	59 / 60	plus
JLOC1	JLOC1_42670.1	4070	4e-23	3604 - 3663	98	59 / 60	plus
Harvest21	ABC07815	726	3e-25	37 - 96	100	60 / 60	minus	ABC07815
Harvest21	ABC07816	1610	1e-23	1515 - 1574	98	59 / 60	plus
Harvest35	U35_16665	1629	3e-25	1532 - 1591	100	60 / 60	plus

Contig Sequence (1629 bp)

>U35_16665 1629 Hv_44K_v2
ACCAGCTGCTCTCCACCAAGAGCTGCTGCTACTACCATCCAATCGTCCCGTCGCCTTTGC
CGACGCCGCCGCCGCAGATCTGATCCGCCCTCCGTCCTTCCGTCTTCCAAGATGGCGATC
ACGGTGAGGCGGTCGACGATGGTGCGCCCGGCGGTGGAGAGGCCGCGGGAGCGGCTCTGG
AACTCCAACCTCGACCTCGTGGTCCCGCGCTTCCACACGCCCAGCGTCTACTTCTACCGC
CGCCCCGAGGCGGGCGCCGACGGCTTCTTCGACGCCGACCGGATGCGCCTCGCGCTGGCC
GACGCGCTCGTGCCCTTCTACCCGATGGCCGGCCGCCTCGCGCGCGACGAGGACGGCAGG
GTCGAGATCGACTGCAGCGGGGAAGGGGTGCTCTTCGTCGAGGCCGACGCGCCCACCGCC
ACCGTCGACGACTACGGCGACTTCGCGCCCACCATGGACCTCAAGCGCCTCATCCCGCCC
GTCGACTACACCGACGACATATCCTCCTTCCCGCTCCTCGTGCTTCAGGTGACCTACTTC
AAGTGTGGGGGCGTCTCCCTTGGTGTCGGAATGCAACACCACGTTGCTGATGGCATGTCT
GGCTTGCACTTCATCAACTCGTGGTCTGACCTCTGCCGCGGAGTTAAAATCGCAGTCATG
CCCTTCATCGACCGCACTCTCGTCCGTGCTCGTGATCCACCTACTCCATCTTACCCGCAT
GTTGAGTATCAGCCTGCCCCAGCCATGCTGTCGTCCGTGCCTCAGGCTCTCGGTGGCAAG
CCAGCGCCGCCTCCCACTGCTGTGGACATCTTCAAGCTCACCCGCTCAGAGCTTGGCCGC
CTGCGTTCGCAGCTCCCCACAGGTGAAGGTGCGCCACGGTTCAGCACGTATGCAGTGCTA
GCTGCACATGTCTGGCGCTGTGTCTCCCTTGCGCGCAACCTGGCTCCGGAACAGCCCACC
AAGCTGTATTGCGCCACCGATGGGCGACAACGGCTGCAGCCCCCGCTGCCAGAAGGTTAC
TTTGGGAATGTCATCTTCACCGCCACCCCGCTCGCTGAGGCAGGCAAGGTTACGAGCGGG
CTGGCGGAAGGAGCAGCGGTCATCCAGGGAGCGCTAGACAGGATGACTAGCGACTACTGC
CAATCAGCCCTGGACTACCTGGAGATGCAGCCGGACCTGTCAGCATTGGTCCGTGGAGCA
CACACTTTCCGGTGCCCCAACCTCGGCCTCACCAGCTGGGTGCGCCTGCCGATCCACGAC
GCCGATTTTGGCTGGGGGAGGCCGGTGTTCATGGGTCCTGGCGGCATCGCGTACGAGGGG
CTGGCGTTCGTCCTCCCGAGCGCGAGCAAGGACGGCAGCCTGTCCATCGCCATCTCGTTG
CAGGCGGAGCACATGGAGAAGTTCCGGAAGCTGATCCTCGATGTGTAGATAGACCGCCGT
TTAGAGAAAAGTTTTACAGGGCAACAAAGCTTCAGGTTGCGCCGAACGTTTTTCTGGGGG
GTATATATATGCCTGGAGTTTCAGATTAACACATACTGGAGTTTATACGGTGGACAGAAC
ATAATCTTATTCTTGTGGGATATCAATAATGAATTTATGTTTTTTTGTGTAAAAAAAAAA
AAAAAAAAA

Homology of Contig U35_16665 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g42250.4	443	protein\|transferase family protein, putative, expressed
Brachypodium v1_2	Bradi5g14720.1	444
Arabidopsis v10	AT5G48930.1	433	\| Symbols: HCT \| hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase \| chr5:19836654-19838092 REVERSE LENGTH=433