barSeed - Barley Seed Development Database

Probe CUST_1258_PI390587928

Source Contig U35_30958

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1258_PI390587928	Hv_44K_v2	GGTCTCACTCCACTCCTCAGTTTTGCTGCTGATTACTTATTCAGATGGTAAACAAGTCGC	278	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.203	1.786	1.224	0.903	0.282	0.274
Raw	2699.731	6191.927	3701.430	4299.240	471.949	502.285

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71066.2	2370	2e-24	2247 - 2306	100	60 / 60	plus	ABC31092
MLOC	MLOC_71066.3	1763	2e-24	1703 - 1762	100	60 / 60	plus	ABC31092
MLOC	MLOC_71066.1	1866	2e-24	1743 - 1802	100	60 / 60	plus	ABC31092
JLOC1	JLOC1_47197.2	1392	8e-25	1269 - 1328	100	60 / 60	plus
JLOC1	JLOC1_47197.1	1634	8e-25	1511 - 1570	100	60 / 60	plus
Harvest21	ABC31092	409	3e-25	279 - 338	100	60 / 60	plus	ABC31092
Harvest35	U35_35629	680	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_30958	409	3e-25	279 - 338	100	60 / 60	plus

Contig Sequence (409 bp)

>U35_30958 409 Hv_44K_v2
CGCCGGGCAGGATGGCGACAAGCTGAGCGTCCCCTTCTTCGACTTCCTGGGCGTGGGCTC
GACATGACCGGGCTGGCGGTGCGGTGTACAGGTGGAGGCCGATATCATCATCGTCATCAT
CATCCTAAGCGGTAGCGGTAGCGGTGAATCCTTGCTAGCTAGTTAAGCTTAGAGTCTAGA
AGAAGCAGACTAGGAGAAAATGAGGAGGAGTTTAAGTTGTTTATTATGGCGATTTAATTA
TGTGGGCATATGGGTATGGCGATGGATGTGACCTCTCTGGTCTCACTCCACTCCTCAGTT
TTGCTGCTGATTACTTATTCAGATGGTAAACAAGTCGCATGTAATGTAATGTAGTGTAAT
GCATGTAATGGTGGCAACCCAAACTTTTAGTTTCAAAAAAAAAAAAAAA

Homology of Contig U35_30958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None