barSeed - Barley Seed Development Database

Probe CUST_12582_PI390587928

Source Contig U35_1779

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12582_PI390587928	Hv_44K_v2	AACAAGCATGTTAGATCGTGTAAGTTGATGTGTGTGTGTATCTACTACACTACTTTACTT	1028	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248358.1	1261	2e-24	1029 - 1088	100	60 / 60	plus	ABC05251
MLOC	AK376942	3346	2e-24	3207 - 3266	100	60 / 60	plus	ABC05251 ABC07507
MLOC	MLOC_16341.1	904	2e-24	649 - 708	100	60 / 60	plus	ABC05251
JLOC1	JLOC1_11251.1	1300	8e-25	790 - 849	100	60 / 60	plus
Harvest21	ABC05251	1200	3e-25	1020 - 1079	100	60 / 60	plus	ABC05251
Harvest35	U35_1779	1255	3e-25	1029 - 1088	100	60 / 60	plus

Contig Sequence (1255 bp)

>U35_1779 1255 Hv_44K_v2
CACTCGCGCAACCCACGCACAACTGCAGCAGCAAGCAACGAGCACGGGCCGTCCTCCCGC
ACGCACGCACAGAGCCAGGAGACCTCAAACCCGCCTCCTCGGCCACCCTCTCAAAAGCCA
AGATCTCCCGGCGCGCGGCGCAGTAATGCTCGCCTGATTGCGCTGGTCATGGCGCCGACA
CAGGAGCGGGACTACATCGGGCTGTCGCCGGCCGCGGCGGCGGCGGCCACGGAGCTCCGC
CTGGGGCTCCCGGGAACGGAGGATGCCGCTGGGGACGGCGGCGGGGCGGCGTCGGGGGCG
CCGCTGACGCTGGAGCTTCTGTCCAAGGGCGGGGCGAAACGCGGGTTCGCGGGCGCGGTG
GCGGAGGAGGAGGACGAGAAGAAGAAGGCGCAGCCACCGGCCGCCAAGGCACAGGTGGTA
GGATGGCCACCAATCCGCAGTTACAGGAAGAACACCATGGCGACGAACTTCTCTGCTCCT
AGAAGCAAAGACGAGGCCGAGGCGAAGCAGGCGCCAGCACCAGGCTGCCTTTATGTCAAG
GTTAGCATGGATGGTGCTCCATACCTCAGGAAGGTGGATCTTAAGATGTATAAGAACTAC
AAAGACCTCTCGCTGGAGCTGGAGAAAAAGTTCAGCGGCTTTACTGTTGGTCATGGTGAA
TCGACTGAAAAATCAGGAAGAGACGGACTATCTGATTGCCGACTGATGGATCTTAAAAGC
GGGACTGAACTTGTCCTCACTTATGAGGATAAGGATGGTGATTGGATGTTGGTTGGAGAT
GTTCCATGGCGGATGTTCACAGACAGCTGCAGGAGGATGAGGATCATGAAGGGGTCAGAT
GCAGTGGGCCTTGCTCCGAGGGCCACCGAGAAGAGCAAGAACGAGAAGTAGCAAAAACGA
CGAACCCGATCTGTTTCCTGCGGTCGCATCGTACAAGGGTGATGGACCTTATGTGTGAGA
AAGGGATTTATATATAACCTACGTGTATTCTCTTTATTATTTCCTTCTATCTATCTGTGT
TCGTTCGGAACAAGCATGTTAGATCGTGTAAGTTGATGTGTGTGTGTATCTACTACACTA
CTTTACTTTGATTCGGTCGCGTGTGTTGTATGTAGTTTCCGCTGTAAATCGGTGTGCTAT
GCTTGTACCTCAAACTCGTGCTTTCTGGAGTTCGGGCTGTCTGCTTGCATCAAAAAAAAA
AAAAAAAGCCATGAGAACAACGTTGCTTTCACCCTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22870.1	267	2e-102	protein\|OsIAA21 - Auxin-responsive Aux/IAA gene family member, expressed
Brachypodium v1_2	Bradi2g31820.1	242	2e-68
Arabidopsis v10	AT4G29080.1	305	5e-57	\| Symbols: PAP2, IAA27 \| phytochrome-associated protein 2 \| chr4:14323665-14325213 REVERSE LENGTH=305