barSeed - Barley Seed Development Database

Probe CUST_12580_PI390587928

Source Contig U35_601

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12580_PI390587928	Hv_44K_v2	AGATGCTCTCTTCCTTGGCTATCACAATGGCTACATTTTTCTCTTGCATTCCCCAAAAAA	1042	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.989	2.328	0.583	0.476	1.090	0.971
Raw	18.888	23.577	2.772	3.644	3.193	3.141

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53258.1	3309	9e-22	1313 - 1367	100	55 / 55	plus	ABC02177 ABC45908
MLOC	MLOC_53258.2	1779	9e-22	1329 - 1383	100	55 / 55	plus	ABC02177 ABC45908
JLOC1	JLOC1_34197.1	1889	5e-22	1098 - 1152	100	55 / 55	plus
Harvest35	U35_601	1113	3e-25	1043 - 1102	100	60 / 60	plus

Contig Sequence (1113 bp)

>U35_601 1113 Hv_44K_v2
GCCTCTCCCTTGGAGCCACTAAAACATCTTGCCATCTGGACAGATCTTCTTCTTGTAACA
CATCCATCCATTTGACGCTGCAGGCAGAGCAGAGTTGAGCGTGTGGGAGTCGAAGGAGGA
CATCGAGATGGCCACTGCATATGCTCCTCCCATGGCGAGCCAGGTGATGAAGAGCGGCTT
GGCGTGCTCCAAGCCGCGGGGCATGTCCGGCGCTTCGCTCACCCGGAGGCCCCGCTTCGT
CGTCAAGGCTGTCAAGTCTGACAAGCCGACGTACCAAGTGGTCCAGCCCATCAACGGCGA
CCCGTTCATCGGCAGCCTGGAGACGCCGGTCACCTCCAGCCCCCTCGTCGCGTGGTACCT
CTCCAACCTCCCCGCCTACCGCACCGCCGTCAGCCCGCTCCTCCGCGGCATCGAGGTCGG
CCTCGCCCATGGCTACCTCCTCGTCGGCCCCTTCGCGCTCACTGGCCCGCTCCGCAACAC
GCCCGTGCACGGACAGGCCGGCACACTCGGCGCCATCGGACTCGTCTCCATCCTCAGCGT
CTGCCTCACCATGTACGGCGTCGCCTCCTTCAACGAGGGCGAGCCGTCCACCGCGCCGGT
GCTCACCCTCACCGGACGCAAGAAGGAGGCCGACAAGCTCCAGACCGCCGAAGGGTGGTC
GCAGTTCACCGGAGGCTTCTTCTTCGGCGGTGTATCCGGCGCCGTCTGGGCATACTTCCT
CCTCTACGTGCTCGACCTCCCATACTTCTTCAAGTAGATTAATAGGTGGCATGCATGTAC
GATGTCTCCAGATCATGCCATCTCTTCTCGGTGGTTGCCTGAACGAGTCTTCTATGTATA
AATGAATTTTTACATATTCCTCATAATCTTTGGGTAAAAAAAAAAAAAAAAAATGGACTC
GTGGTGGTGGTTGTCGGCGCCGTCTCGTCGCTGCGCCGCCTTCTTCTACCTCCTAGCAAC
ACTCTCTTCTTCTCTCAAGAACACACACCACGGAGAAACTCTACAAACACATGTACTAAG
GAAGAACACAAAGGCTTTGTCGAGATGCTCTCTTCCTTGGCTATCACAATGGCTACATTT
TTCTCTTGCATTCCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_601 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g23200.1	209	1e-125	protein\|photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g08020.1	210	5e-128
Arabidopsis v10	AT4G12800.1	219	1e-90	\| Symbols: PSAL \| photosystem I subunit l \| chr4:7521469-7522493 FORWARD LENGTH=219