barSeed - Barley Seed Development Database

Probe CUST_12576_PI390587928

Source Contig U35_1781

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12576_PI390587928	Hv_44K_v2	GGTCCTGAAAAGATTTACCATATAATACTGAGATGTTATTGTCGAATCTTTGCAAGGTGT	426	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252927.1	496	2e-24	408 - 467	100	60 / 60	plus	ABC04691 ABC35180
MLOC	MLOC_70397.1	647	2e-24	254 - 313	100	60 / 60	minus	ABC04691 ABC35180
JLOC1	JLOC1_46717.1	1093	8e-25	166 - 225	100	60 / 60	minus
Harvest21	ABC04691	513	3e-25	427 - 486	100	60 / 60	plus	ABC04691
Harvest21	ABC35180	465	2e-22	396 - 450	100	55 / 55	plus	ABC35180
Harvest35	U35_1781	513	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (513 bp)

>U35_1781 513 Hv_44K_v2
TCCCCCGGGTCTGCAGGAATTGGCACGAGGCACGCACCAGGTTTGGAAGCCAGACGGACA
AGAGCAGGATCAGCGAGTTCGTCAGATAGATAAAACAAGATGGTGGCTAATGGTGACGCC
CCTGCAAGAGGGAGTGCAGCTGCAGCTGCAAGCTTGCGCAGGCGTAGAACCACCAGTGGT
GCTGCTGCTGCTGGAGGTGGTGCCGGTGCCAGTACAATGCTTCAGTTCTACACCGATGAG
GCTGCTGGGCGCAAGATGTCCCCAAATGCTGTTCTGATCATGAGCATAGGGTTTATTGCG
GTTGTTGCTGTGCTCCATGTTTTCGGCAAGCTGTACCGCACCCCTAATTAGGTTCCATAT
ATACAAGCTGAGTTTATGTGTCTATGAATAGCAAAGTCGTAAACTTTGCATAGCAAATGA
CTGTCGGGTCCTGAAAAGATTTACCATATAATACTGAGATGTTATTGTCGAATCTTTGCA
AGGTGTTTGTCTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1781 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None