barSeed - Barley Seed Development Database

Probe CUST_12574_PI390587928

Source Contig U35_1782

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12574_PI390587928	Hv_44K_v2	CCCCACTATCATGAATTTGGGTGCAGTCAATAAATTTTACCATGTCCTTTGGTTTCCTCA	1323	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5942.1	4097	6e-24	2627 - 2685	100	59 / 59	plus	ABC04491 ABC05120 ABC05121 ABC42371
MLOC	MLOC_5942.2	4378	6e-24	1592 - 1650	100	59 / 59	plus	ABC04491 ABC05120 ABC05121 ABC10124 ABC42371
MLOC	MLOC_5941.1	2728	6e-24	2629 - 2687	100	59 / 59	plus	ABC04491 ABC42371
MLOC	MLOC_5941.2	6166	6e-24	1493 - 1551	100	59 / 59	plus	ABC04491 ABC05120 ABC05121 ABC10124 ABC42371
JLOC1	JLOC1_3859.2	5260	3e-24	2745 - 2803	100	59 / 59	minus
JLOC1	JLOC1_3859.1	3693	3e-24	1178 - 1236	100	59 / 59	minus
JLOC1	JLOC1_3858.1	2876	3e-24	1477 - 1535	100	59 / 59	plus
Harvest21	ABC04491	1406	1e-24	1324 - 1382	100	59 / 59	plus	ABC04491
Harvest35	U35_1782	1399	3e-25	1324 - 1383	100	60 / 60	plus

Contig Sequence (1399 bp)

>U35_1782 1399 Hv_44K_v2
CCTCATCTCACCTGTGCTCTCCACACGACCCACACCGAAAATCCAGAGCCTGCCCGCCCG
CCTCGCCTCCTCGTCTGCCTCCTCCCCTCCCGCGCTTCAGTTTCCAGGCTAGGTTGCTGC
AGTTGTTCACATGGATTCCTTTTTCCAAAGAGCTTTCGGTGACCCAATGTGCTCGGAAGA
CAGTAATGTTGTCCAGCAAGGAATTGAACGATGCCCATTCCTGAGGAACATCAACGAGCC
TACAAGTTTTTCCTTGACATCCGTTAATTTCCCCGCTCCGGCAACCGGAGCCAAGGGTCC
AATTTTCGAAGACGGACCCAACTTTGACACGGCATTTCGAGTTTTCCACGGCAGAGACGG
GGTTGTTCCGCTTTCAGAAGGAGCCTTTGCACATATTGAGAAGCCTCTGCCAAAGCCCAC
TCCTGAATTTAACCCCTTGGCAGCCAAAGCAGCTACCATCAGTCTCTCAGGATTTGGAGG
CTTTTTCAGCTTCGGTGATTTCTCAAACAAGCGCAATAAGCAGAACTCCAACAAGAAGAA
TCCCAACAACCTCCCCCAGAATAAAGGCCAGTCTAATAACAATCATGAAGCGATGAGCAA
CGATTGGCTGGAAAATGGTCAATGCCCTCTTGCAAAGTCATATAGAGCAATCGGTGGAGT
CGTGCCTCTTGTCGCAAAGCTGCTGACACCCCCAGCTGGTATGAAACTGACGTGCCCTCC
TGCGATTGTTGCTGCCCGTGCAGCAATATCCCGCACGGCATTTGCGAAGGGGCTTCGCCC
TCAGCCCCTACCAACAAAAGTAGTGGTGATCGCGCTGCTCGGTATGGCAGCAAATGTTCC
TCTTGGCATCTGGAGGGAGCACACCACAAAGTTTTCAGTGCAGTGGTTTGCGGCGGTCCA
TGCTGCAGTGCCTTTCATAGGGATGCTGAGGAAGTCCATCCTAATGCCGAAGAGCGCCAT
GGCCCTTACAATAGCTGCCTCGATATTGGGTCAGACAATTGGTTCAAGAGCTGAGCGTAT
CAGGTTGAAGAGGGCAAAATTAGCAGCAGAGGGCCGTGGTCATGAACATGCTACCCGGCT
TGAAGCTCCGGTGAGCCTGAAAACTGGGAGCTCAGGTCCTGTCCAGCTCTGGGATCCGCT
CGGCCTCAGGGTCAAAGGCGTCGTGTCCCCAGCCCTGGTTCCGACTGTCGGTGCCATGTA
TTGATGAGATGATCATGCTTATTGCGGCGGCTGCGACAATTGTATCAGAGTTCCAGAAAT
TGTTTCTTTGTATTCATTGTTATTGTGTCTTGTAAAGGATTGCTGGCTACATTGGATTCT
TGTCCCCACTATCATGAATTTGGGTGCAGTCAATAAATTTTACCATGTCCTTTGGTTTCC
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1782 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g43060.1	353	6e-154	protein\|expressed protein
Brachypodium v1_2	Bradi3g21610.1	357	0.0
Arabidopsis v10	AT4G25030.1	344	9e-100	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 125 Blast hits to 125 proteins in 36 species: Archae - 2; Bacteria - 31; Metazoa - 0; Fungi - 4; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr4:12865336-12866638 FORWARD LENGTH=344