barSeed - Barley Seed Development Database

Probe CUST_12572_PI390587928

Source Contig U35_1783

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12572_PI390587928	Hv_44K_v2	TACCGGCTGTAAACAATCCATGAGAAGAAGAATGAAAATGACGAAGAAAAATTGATCCCA	2990	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.466	2.486	1.189	0.809	0.423	0.526
Raw	174.258	471.627	187.739	204.264	36.179	50.379

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70696.1	3021	2e-24	2892 - 2951	100	60 / 60	plus	ABC05106 ABC43210
MLOC	MLOC_70696.2	2669	2e-24	2590 - 2649	100	60 / 60	plus	ABC05106 ABC43210
JLOC1	JLOC1_46930.3	1106	8e-25	959 - 1018	100	60 / 60	plus
JLOC1	JLOC1_46930.2	3019	8e-25	2872 - 2931	100	60 / 60	plus
JLOC1	JLOC1_46930.1	2734	8e-25	2587 - 2646	100	60 / 60	plus
Harvest21	ABC05106	989	3e-25	20 - 79	100	60 / 60	minus	ABC05106
Harvest35	U35_1783	3070	3e-25	2991 - 3050	100	60 / 60	plus

Contig Sequence (3070 bp)

>U35_1783 3070 Hv_44K_v2
TCGAGCACTGTTGGCCTACACCACAAATCATATCAACCGCCCCGTCCCCGACCCCGACCC
GATTAACCCTACCTTCCGCTCGATTCCACTCCCCTTCCTCTCTTCTCCTTCTCCACCCGC
TCGTCGGGTCCGGAGCAAGCAGCGCAGCGCACCGCACATACACATCAGATCAGACCAATG
GCGGCCGCGCTGAGGAGGGCCGTGGCGCAGCGCTTCGCGGCGGCGGCGGCCCCGCGGCAG
GCCTACGGGACGCCGCGCCGCTTCATGCAGGAGCAGCGCCCGGCCTTCCGCCCCGCCGTG
CCCCCGGACGTGGGATTCATGCCCCTGGCCGACCGGATCCGCGACCACCTCGGCGTCTCC
TTCCCGCGCATCAACCTCGACGGCCTCGTGCCGCCCGCCCCGCCCCGCCCGCATCCTCCC
ACTCCCAGGGAGGCCGCGACGGTCGTGGCCAGCCTCACGGTGGAGGAGGCCCGGAAGGTG
CTGCGCGCCACGCAGATGGAGGCGGCGCGCGCGCGGGTGCGGGCCTCCCGCGAGGGCACC
GTCACCCACGCCGAGTTCCTGCGCCTCTGCTGCGACGCCGCGGGGGCCGACGACGGGCCC
TCCGTCGCGCGCGCGCTCGACGAGTCCGGATCCGTCATCGTGCTCGGCAGGACCGTCTTC
CTCAGGCCCGAAATGGAAATGAACCAAAGAAACGGCGGTGTTCTAAAACAATAGAGCAGT
TGTGACACCAAAAGTTTGGGGGATTTTATCCCCCCGTCCCGTCCCGTTCCGTTCCAAGAT
GGGAGTTTCCTTTTCTTCTCTCAAAACCAGGAGGAAAACTACAAATCTAATTTCTACCCC
TCGATCTAAATCTGAGGAGGGAAGAAACAAAACAGACACTCTTGCTAAAAAAACTATCTC
CGATGAATGAACATGAGGAGAACCTAGCTGCCACTCAGCACCCAAAAAAGAACATGCATG
ATTATTCTCTATATTCAGATTGGTTGGCATCTAGTCACCATGCTGATGGTAATGGCTCCA
TTATTTTGGGAATTGGAATGGGGCCATCAACCCTACTATTGTTTGAGCACATATTTTCAA
CTTCATCATTACCATTCATAGTCATATAGATGTTCATACTGAAGTACTTCACCAGGTTTT
CTACTCTATAGTTTAAAAGACACATTAGTGAAGGACCATTCCACTAGCTGTTTTCCGGTC
TACAATTAGATGGCAGTAATAAGTAGTAATTGACAGTATGAATCTGCTGTTTGAATTGCA
TAGTAGAAGATTCAAATCTACAGTACAGTCATATGTCCGTGGTGGGGGTGGTTTGATTTA
CCTTTGATCATGTCATGCATGCCAACGATTTAGTTAGTCACATAGTGGAAGATGAAGTAG
TGCTACTACCATTTGCATAAGAAGTAGTGCCTGTTGTGTCCATGAGATCATCCCTTTTTG
GCAATCGTGACACCGGAATGGCCCATCATGTGGTGTCCTTGTCGTCACTGGTTCCGTTCG
TTTGTTAGGGTAAAAGCTATTTACTTGCAAAAATATCAATTTTGTTTGGAGATTTTAACC
TGCATCTTAACTGCAACAGTGTAAAATTAATCTTGTGAATGCTATTTGTTTTCATGAGAT
ATGAAGTACCAAAAAAATGGTGTTCTTATTTCCTGCTGAATAGATAAGCTGCATCCCATC
CCATTTGAAAAATAGGAGACTAATGCAGGGCTAACAAGTCAATGACAAATCTACTTCTCT
TATCTTCGTGACCTTCTCTCCCAAAAAGTTTTGGGTGGACCTAAACAAAGTTTAGGAACA
TCATCACATGCCATCTGGTTCAGATTAGGTCATAGCAGTTGCAGGCAAGACAAGTGGTAT
GATTTATTGTTTGTTTTTTGCTTGGTCCCTCCGTGGTCACCAGAACATGCCAAGCTACCC
CTTGCAAGTTGTGCCTGTTGGTGGTGACAAAACTAGTTGTGGAAAATCTTTTTGCATGAT
TTAGTCTGTAGTTGTATCTGCTGTTAATAGCCTGTTAACTTTGTCATGAAACTCTTCAAC
ATGGATGCTAAGGCGTGCAGTCGAGATGTTTAATGCCCAATACTGACTTACAAAAAAAAC
ACTTTCTTTTGGAAGGTATTTGAATCCACGTGGATGATAGAACCAAAACATTTTGCACCT
GTTTTGACCGTCCAATCATATACAGTTTGAGTGAAATGTTTTTGCCTTCCAGCATTGCTC
TTTCTTTTATTGAAAAGAAGAGCAGCCAAGTAAAATTTGGAAATGTTTTTGTCCTTTTTG
TTAAAAATTCCAGGTTGTGAAAGCAATTGAGAAGGCCATACCCATACCACGAGGGGTACC
TGTCGCAGAGAATGACCCTGCAAGGGAGGAGCTGAAGGCCATGGAGGCACAGAAGGTGGA
CATTGACCGCATGGCGACGCTCCAGGTGCGGCGGGAGCTGTGGGGAGGGCTGGCCGCCCT
AGCCCTCCAAACGGCCGGCTTCATGAGGCTCACATTCTGGGAGCTCTCCTGGGACGTCAT
GGAGCCCATCTGCTTCTTCGTGACGTCGACCTACTTCATGGCCGGCTATGCCTTCTTCCT
CCGGACCAAGAGGGAGCCGTCGTTCGAGGGCTTCTTCCAGAGCCGTTTTGCAGTGAAGCA
GAAGCGACTGATGCAAGCCAGGGATTTCGATGTCCGAAGGTACAGCGAGCTCCGGCGAGC
CTGCGGCCTCCCGGCGCTATATCCTCAGAGCCCCTGCACGTCGTCCTCCTCGCAGGAGAG
CCACCACCATTGCCATTGTCATTGATGTGTGTTGTTTCGGATTTTTTATGCCCCATTTGA
TGTGGTTGCTGCTTCATGTACCGTTGTGGAATGTGGATGCGAAGCATACTCATTGACGAG
ATCAGATTCAGATTTTAAACTCGAAAAAAAAAAAAAAAACGTGTCCTGTCCTGATGGATG
GATGGATGCATCTGAGTCGTGGGGTTAGGCGAGGGAGGTCAGCGTGTATATACCGGCTGT
AAACAATCCATGAGAAGAAGAATGAAAATGACGAAGAAAAATTGATCCCATCAAAAAAAA
AAAAAAAAAA

Homology of Contig U35_1783 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35770.1	337	3e-63	protein\|E2F-related protein, putative, expressed
Brachypodium v1_2	Bradi3g30110.1	322	3e-72
Arabidopsis v10	None