barSeed - Barley Seed Development Database

Probe CUST_1256_PI390587928

Source Contig U35_16666

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1256_PI390587928	Hv_44K_v2	GTTTTCTTTGCCCGTCATGTCTTCATTGCATTGCGAGTTGCGAGCGTTAAATCGTTTTTT	960	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.020	1.373	1.239	1.023	0.377	0.270
Raw	605.948	1256.449	1013.258	1330.303	168.929	131.387

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10046.3	1615	7e-23	1530 - 1590	98	60 / 61	plus	ABC06313
MLOC	MLOC_10046.1	3061	7e-23	1253 - 1313	98	60 / 61	minus	ABC06313
JLOC1	JLOC1_6548.1	2332	4e-23	521 - 581	98	60 / 61	minus
Harvest35	U35_16666	1023	3e-25	961 - 1020	100	60 / 60	plus

Contig Sequence (1023 bp)

>U35_16666 1023 Hv_44K_v2
CCACGTCTGCCTCCAGACCGGCCGCAAGCACTACGTCGGCCCGTTTGATGTCATCGGCAA
GATCCCCGCCCCCGACCCGCCCTACACCGAGGACATGCCCCGCCTCGACCACCCCAACTT
CTACTACGACCTCGAGGACGTGCTCTTCGACGAGGTCTCCCGCCGCGACGGCGCTGTCAG
CTGGTCCGTGCACCGCCCCACCGTCATCTTCGGATTCTCCCCCCGCAGCGCCATGAACGT
CGTCGGCAGCCTGTGCGTCTACGCTGCCATCTGCCGTAAGGAGGGCGCCACGCTGCGGTG
GCCCGGCTGCCAGGTTGCCTGGGAGGGCTTCACGGATGCCTCCGACGCCGACCTGGTCGC
CGAGCACGAGATCTGGGCGGCCGTCGACCCGTTCGCCAAGAACGAGGCTTTCAATTGCAG
CAATGGGGATGTGTTCAAGTGGAAGCAGCTCTGGCCGATGCTGGCCGACCGCTTTGGGGT
GGAGTGGGCGGGGTATGAGGGAGAGGACAACCGGTTTTCGCTCTCCGACGCCATGGCTGG
GAAGGAGGCCGTGTGGACAGAGATCCTCCAGGAGAACGAGCTTGTCACGACGGAGCTTGA
GGAGATCACCAGCTGGGGGTTCGTTGATGCCATGTTCAATATCGACATCGAGCATTTGGA
CAACATGAATAAGAGCAAGGAGCATGGGTTCCTCGGCTTCCGTAACACCATCAACTCCTT
CATCGCTTGGATCGATAAGATGAAGGCTTCCAAGGTTGTTCCTTGATGCTCTTATTGTCT
AGTACTCTATTGTTCTTTACAGCGTATGCCACCAGATCCCATTTTATCTCTCATTTATCA
ATTTGCTTCTGAAATTAGTTACATGCTGTTATTTGTGCCAATTGTTGTAATCTAGAATAA
GCCAGAACCAAATAAAGCTCCCAAGTTGTGAATCGGTTTCAAAAAAAAAAAAAAAAATCG
GTTTTCTTTGCCCGTCATGTCTTCATTGCATTGCGAGTTGCGAGCGTTAAATCGTTTTTT
ACA

Homology of Contig U35_16666 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g32170.1	397	2e-160	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi1g16000.1	397	1e-166
Arabidopsis v10	AT4G24220.1	388	3e-107	\| Symbols: VEP1, AWI31 \| NAD(P)-binding Rossmann-fold superfamily protein \| chr4:12565219-12566474 FORWARD LENGTH=388