barSeed - Barley Seed Development Database

Probe CUST_12566_PI390587928

Source Contig U35_1786

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12566_PI390587928	Hv_44K_v2	AGAACAGTCTTGTAACTCCTTGGAGACATAGTTTACCTAACAGGTGCTTTTTTCTGATTT	2957	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.618	1.834	1.201	0.819	0.326	0.389
Raw	11128.587	19630.650	11246.143	12097.810	1664.800	2180.107

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354470	3109	2e-24	3029 - 3088	100	60 / 60	plus	ABC05785 ABC05786
JLOC1	JLOC1_23480.2	2807	8e-25	2699 - 2758	100	60 / 60	plus
JLOC1	JLOC1_23480.1	2821	8e-25	2713 - 2772	100	60 / 60	plus
Harvest21	ABC05786	498	3e-25	401 - 460	100	60 / 60	plus	ABC05786
Harvest21	ABC05785	2845	3e-25	2766 - 2825	100	60 / 60	plus	ABC05785
Harvest35	U35_1786	3044	3e-25	2958 - 3017	100	60 / 60	plus

Contig Sequence (3044 bp)

>U35_1786 3044 Hv_44K_v2
AGAGAGAGAAACACACACACAGAGCCGACTGAAGCCCGCAGCGCGCAGCCGAAACCGAAG
CCTCCCACCGCCGCCCCCGCGCCTCGCGTCACCCGGTCCCGAGGGGTTTGCTGGTCGGCG
GCCGCGGCGGCGGAGGAGGGGGATCCCGTCGGCGAGGATGAGCGGCGGCGGCGCGGGCGG
AGGAGGAGGAGGAGGGAAGGGGGCGGGGCCTGTCCCGCAGGCCTCGAAGAAGCTCGTGCA
GAGCCTCAAGGAGATCGTCAACCGCCCGGAAGCCGAGATCTACGCCGCGCTGCGCGAGTG
CGCCATGGACCCCGACGAGGCCGTCAGCCGCCTCCTCTCCCAAGATACCTTTCAAGAGGT
AAAGAGCAAGCGTGACAAGAAAAAAGAGGTTAAAGAGACTCCTGAGCCAAGGTCTCGAGC
GGCAAATAATGCTACCAGTCGGGGTGTAAGAGGTGGCCCAGATCGAGGTGGGCGAAACAA
TTCTGCTTACAACAGCTCCATTGACAACATGACTTCAAGGTCATCGGTCTCAGGATCTGG
TATGCCATCAACCAATTCCACCCAGAAGCAAACAGTTCCAAGTTCCTCTGTGAACAAAAA
TCTGGTTGCTGATGCACCATCAGTACCACCGCAAACATCATCTGGGTTTCAGCATGGTTG
GTCTGGGACGCCAGGTCAGTTGTCAATGGCCGATATTGTGAAGATGGGTGGCAGGCCGCA
GGCTCAGGGGAAGCCTTCTACCAAGCCTGTGGTCACAGCGGACAAAGGATATGCCGGACA
ATACCCATCTTTGCCCACCACTGTAAACCAGATTACAAAACAATCTGTGAGCACAGTTGC
ACCAACAGAGCTTGACCAGGGGTTACCTTCTGCGCAAGACTCTGTTCTGGTTAAGGACCA
CAGTCACACAGCTGCTGATAACAAGCAGAAATATGATAATGATTGGGCTCCACAAGATGA
CCCACCAGTAGGGAATCAATCCTCCCTCCCTGAGACATCCGGGGACCCATCATTATACGA
TGCACCATTACATCCATCGTCGCTTGTTGCTGATGCGGTTTACTTGCATGAAAATTCTTA
TTTGGATGATAACATCTCTGCTGCAATGAGATCAGGAAATGCTTCTGAGAGACACTTGGA
TCACTATGGAGGAAGTTCTGAATATAGTGACGGATTATTGCAGAACTCGAGTACCTATCT
GGCTCAGACGCATCCTCACATAGAGGACCAAGCTGAGGAGTCCAACGCTGACGTATCCGC
AGCAGCAAACTTTCAGGGTCTGAGCCTACATGATGAAGAGTTAGCTGCCACAAAGTTTGC
CGAAGATAACCCAGCAGTTATAATTCCAGACCATCTGCAAGTTGCCAACACAGGTTGTGC
TGGATTGAGCTTTGGCAGTTTTGGATCTGGTGCATTTTCTGGGCTCCTCCCGCCGCCAAA
GAGCACTGAAAACAATGTGGAGTTGCCTATTGTGGAGGAATCTGAACCTATAGATCATAC
AGATACAAGGGATCAAGATTTCTATGAAATTCCTGCGAATTCGCCACCAAATGAGAACCT
TGAGGAAATTATGGGAGCTAACACAGAGAATCTTGATGTACCTTCTGTTCAACAGCCTGA
TGTCCTGAGGCAAGAAATACTGGATGATCCTTCAGGTGTTCAATATAATCTGCCATCAGT
CTCGAGCCACACGTATGCGAACCCAGCACAGCCAAATGCAATGGATGCAATGCAAGGAAG
TAACCAAGCGCACACTCTTTCACACCTGTCAAGCTTGCTGCAATCAAATACGTTACAACA
GCACAACCTGTTGGGCTCAAATATGGCACCTCTTCGGGACCTGGACTTTGGTTTATCGCC
TTTGTTGGCAGCACAAGCACAATCAATGGGTGCAAGATATAACTCAGCTGCACCAACTAC
TACTGGCATGCAGGAGCCAATGAAGCCAGGAGTTTTCTCGAACACTCAATCCACACAAAA
TCTTCCGAGTACCAGCATTCATATGGCTCCCTCTCTTCCTCAGCAATTAGTCCATCCTTA
CTCACAGCCCACTTTACCTATTGCACCTTTTGCAAATATGATTGGCGCAAATATGATTGG
CTATAATCCATACTTGGCACAAAACTACCCTGCATACCTACCATCAACCGCCTTCCAGCA
AGCGTACTCGAGTAATGGACAGTTCCATCAGTCTGCCGCTGCTGTACCTGGAGCTGGCAT
GAAGTACTCAATGCCACAATACAAGAACAACATGTCAGCCGCAAATTTGCAACAGCAACA
ACAACCTTCGTCAGTCATATCTGGTTATGCAGGCTTTGGGAGCTCAAGTAATCTTCCAGG
AAATTTTGCCCTTAACCAGAATGCTGCTCCTGCATCGGCCAATCTTGGGTTTGATGAAGC
ATTGAGTGCTCAATACAAAGAGGCCAATCAATATATGGCTCTCCAGCAGCAGGGCGATAA
CTCTGCGATGTGGCTTCATGGCGCTGGTTCAAGAACAGCGTCAGCACTTCCTCCTACCCA
GTTCTACGGCTACCAGGGACAGAGTCAGCAGCAGGGCGCCTTCCGCCAGGCGCAGCAGCC
CCAGCAGCCTTCTCAATATGGGGGCCATGGATACCCAGCATTCTACCATAACCAGGGAGG
CTTGGCGCAGGAGCACCACCCTCAGAACCCGGCGGACGGAACCCTGAACGGCTACCAGGC
GGCAGCCCAGCAGCAGCAGCAGCAGCAGCCATCTCACCAGAGCTGGCAGCAGCACACCAG
CTACTGAGCCGCCCGCACTCTTGTTGCGGTGCTGGCTCACTGTGGCTGCGGAGTAAAGCA
GCTCAGAGTAGCTGAGCTTGTGGCTCGCTGAGGAGAGGGTCGGCGTCGTCTTGGCAGAGC
GTTTTAACGTGTTGCGTGTCACATGTCGGTGTTGTCGGACTGATGTGTTTGTTTTTCGGT
CGTTATATGCGCGGAGCAGAACAGTCTTGTAACTCCTTGGAGACATAGTTTACCTAACAG
GTGCTTTTTTCTGATTTCTGAAATTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49180.1	853	0.0	protein\|protein of unknown function DUF1296 domain containing protein, expressed
Brachypodium v1_2	Bradi2g16237.1	860	0.0
Arabidopsis v10	AT1G29370.1	831	6e-78	Kinase-related protein of unknown function (DUF1296) \| chr1:10278080-10283024 REVERSE LENGTH=831