barSeed - Barley Seed Development Database

Probe CUST_12559_PI390587928

Source Contig U35_612

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12559_PI390587928	Hv_44K_v2	GTTTTCTACATGTGTTCGACCTCCATCTGTTACCTTTATTACACATCGAATCATCAATAA	527	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15754.1	534	7e-23	234 - 293	98	59 / 60	plus	ABC02041 ABC46972
JLOC1	JLOC1_10824.1	447	4e-23	110 - 169	98	59 / 60	plus
Harvest21	ABC02041	601	3e-25	528 - 587	100	60 / 60	plus	ABC02041
Harvest35	U35_612	601	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_612 601 Hv_44K_v2
GTTATTCAAGCTACCTTTCTTAAGCTCTCAGCTCCTTCCTAGTTCCAAAGTTGCTAGCAA
GCAAGACGAAGCACTAGATCCTCGATGGCACGCGTGGCACTGCTCGCCGTGTTCGCCCTG
CTCGCGGCACTGGCGGTGGCGGAGATGGCGTCCGCGGCGGTGACCTGCGGCGACGTGACG
TCCGCGATCGCGCCATGCATGTCGTACGCGACGGGTCAAGCGACGGCACCGTCGGCGGGT
TGCTGCGGCGGGGTGAAGACCCTGAACGGCAAGGCGTCCACCGCGGCCGACCGGCAGGCG
GCGTGCCGCTGCCTGAAGAACCTGGCGGGGAACTTCAATGGCATAAGCATGGGTAACGCT
GCCAGCATCCCCGGCAAGTGCGGCGTGTCCGTCTCCTTCCCCATCAGCACCAGCGTCGAC
TGCAACAAGCTTCACTAAGTTATCTTTGAGCATCATCAGACCTGGCTATGGATAGCTAGC
CGACTGGGCATGTACTGCTGCTGCCTTCTGCATGTGTTGTCGTTGTTGTTTTCTACATGT
GTTCGACCTCCATCTGTTACCTTTATTACACATCGAATCATCAATAAAATTATGTGTTGA
G

Homology of Contig U35_612 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None