barSeed - Barley Seed Development Database

Probe CUST_12558_PI390587928

Source Contig U35_1790

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12558_PI390587928	Hv_44K_v2	TCGTTGTTATCTCGGTTCCATAAGTAGAGACATGATGTAATCGCACTCAGTTTATTTTAT	1211	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.454	1.865	1.213	0.821	0.351	0.330
Raw	2481.750	4900.513	2795.437	3005.438	444.377	460.519

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36730.1	1404	2e-24	67 - 126	100	60 / 60	minus	ABC05202
JLOC1	JLOC1_23695.2	1298	8e-25	1085 - 1144	100	60 / 60	plus
JLOC1	JLOC1_23695.1	999	8e-25	786 - 845	100	60 / 60	plus
Harvest21	ABC05202	1390	3e-25	1212 - 1271	100	60 / 60	plus	ABC05202
Harvest35	U35_1790	1406	3e-25	1212 - 1271	100	60 / 60	plus

Contig Sequence (1406 bp)

>U35_1790 1406 Hv_44K_v2
CCCACCCACCGTTGGTTCTCTTCTTCTCCCTCGGCGAGCGTAGCGACCAGGCTAAGCGGA
GGCACCCAGCGATTCGGCGCGGAGACCGCTTCCTCGGCCGCACCCCCGCATCCCTCTCCT
CCCCCTCCCCCGCGCTCCCCTCCATTTGTCCCCGCCCCCGCGCCGCGCCCCCCCAATCTT
AACCTCCACACCCCGCCCTGGGCCTCGCTCCTCTGGCCCCAAATCTTAACCAGCTCCCTA
CCTCCCCTTCTTCTTCCTCCTCCTCCCCTGTCTCGCCCGCAGCTTCACCGGCAGCGAGGG
AAAGAGGGAGGATGAGCGCGTCCAGGTTCATAAAGTGCGTCACCGTGGGGGACGGCGCCG
TCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACCGACTATGTGC
CCACGGTGTTTGACAACTTCAGTGCTAATGTTGTGGTTGATGGCAACACTGTCAACCTTG
GGCTATGGGATACTGCAGGTCAGGAAGACTACAACAGACTGAGACCGCTGAGTTATCGTG
GAGCTGATGTCTTCCTTCTGGCCTTCTCGCTTATCAGCAAGGCTAGCTATGAGAATGTTT
CAAAGAAGTGGATACCTGAACTGAAGCATTATGCACCAGGTGTGCCTATTATCCTCGTGG
GAACAAAGCTTGATCTTCGAGATGACAAGCAGTTCTTTGTGGACCATCCTGGTGCTGTTC
CTATCACTACTGCTCAGGGGGAGGAACTAAAAAAGTTAATAGGCGCACCCTACTACATCG
AATGCAGCTCGAAGACCCAACTAAATGTCAAGGGTGTATTTGATGCGGCAATAAAGGTGG
TACTGCAGCCACCAAAGGCAAAGAAGAAGAAAAAGGCGCAGAGGGGGGCTTGCTCCATCT
TGTGATCTAATCAATCGGTAGACAAAGAACAAGGGCGAAGTTGCCGCCATGCTATATTAT
TGTTACGTCTTGCTTCAGCGGAGCTGCACTCTCATGGTCGTCATCCCTCCCCCCACCCCC
ACCCCACCCTAGGTTACCCACCGGCAGCTGCAGCAAGGTCTCTTTGTCGAGGCATCGGGC
GATCCATTTGTTTGATTTCTCTTCTTCCTGCCTTGTGATTATCTCGTGTGACTGACAAGT
CGTGGCAATTTAGGTAACTTGCTTAGTAGACGGTATTTCCCGTGTTTGAGACCCCGTAAA
AAAAAAGTATCTCGTTGTTATCTCGGTTCCATAAGTAGAGACATGATGTAATCGCACTCA
GTTTATTTTATTTTTGCTTGTTATTTTCACTTCAATGGAAAATTATGTTTCCTTTCTTGT
TAAAAAAAAAAAAAAAAATGCTCTGTATGCCTGCATCTGGATGCATCCTATATCCTATGA
ATTGTGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1790 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02840.1	198	4e-125	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi3g01930.1	198	2e-125
Arabidopsis v10	AT2G17800.1	197	4e-119	\| Symbols: ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 \| Arabidopsis RAC-like 1 \| chr2:7740313-7741942 FORWARD LENGTH=197