barSeed - Barley Seed Development Database

Probe CUST_12557_PI390587928

Source Contig U35_613

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12557_PI390587928	Hv_44K_v2	CGACCTCCATCTTGCAGATTGTTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAAT	348	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.342	3.634	1.416	0.642	0.123	0.134
Raw	3150.450	5625.573	1858.423	1439.332	87.062	107.718

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374555	800	7e-23	744 - 800	100	57 / 57	plus	ABC02041 ABC02043 ABC02044 ABC02046 ABC02742 ABC46972
JLOC1	JLOC1_14873.1	983	8e-25	661 - 720	100	60 / 60	plus
Harvest21	ABC02045	707	3e-25	565 - 624	100	60 / 60	plus
Harvest21	ABC02043	617	3e-25	503 - 562	100	60 / 60	plus	ABC02043
Harvest21	ABC02042	464	3e-25	349 - 408	100	60 / 60	plus
Harvest21	ABC02040	626	3e-25	505 - 564	100	60 / 60	plus
Harvest35	U35_614	664	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_613	464	3e-25	349 - 408	100	60 / 60	plus

Contig Sequence (464 bp)

>U35_613 464 Hv_44K_v2
GCCAATGAAGCTCTCTCAGCTTCTGCCGAGCTAGCTCCACGGTTTCCAGCAAGCAAGCCG
AAGCACGAGATCCTCCATGGCACGCGTGGCACTGGTCGCCGTGTTCGCCGTGCTCGCGGC
ACTGGCGGTGGCGGAGATGGCGTCCGGGGCGGTGACCTGCGGCGACGTGACGTCCTCCAT
CGCGCCGTGCATGTCCTACGCGACGGGGAAGGCGTCCGCGCCGTCGGCGGGGTGCTGCAT
CAGCACCAGCGTCGACTGCAACAAGCTTCACTAAGTTACTTATGAGCTTCATCACAGCTA
GCCGACTCGGTGTCTCGGTGTCTACTGTTGCTGCTTTCTGCATGTGTTCGACCTCCATCT
TGCAGATTGTTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAATTTTGTATGATGT
TATCTGTTATCAATAATGATTATAAACTAAAAAAAAAAAAAAAA

Homology of Contig U35_613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None