barSeed - Barley Seed Development Database

Probe CUST_12556_PI390587928

Source Contig U35_1791

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12556_PI390587928	Hv_44K_v2	CTATCTTCTTACATGTTTGCTTAGTGCATAATGCCATGTAAGATGCTGACAGAGTTTTTT	736	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36730.1	1404	2e-24	560 - 619	100	60 / 60	minus	ABC05202
Harvest21	ABC05203	1264	3e-25	1094 - 1153	100	60 / 60	plus
Harvest35	U35_1791	908	3e-25	737 - 796	100	60 / 60	plus

Contig Sequence (908 bp)

>U35_1791 908 Hv_44K_v2
TGGTTGATGGCAACACTGTCAACCTTGGGCTATGGGATACTGCAGGTCAGGAAGACTACA
ACAGACTGAGACCGCTGAGTTATCGTGGAGCTGAGGTCTTCCTTCTGGCCTTCTCGCTTA
TCAGCAAGGCTAGCTATGAGAATGTTTCAAAGAAGTGGATACCTGAACTGAAGCATTATG
CACCAGGTGTGCCTATTATCCTCGTGGGAACAAAGCTTGGTAAGAACGTCACATGCCCAC
ATTTTTTCTACAGAAATCTGACATCCTGTTGTGTTTACGACAGAAGTGACGTTGGGTTTC
TAGGCACATAGGTGTTTGTAGAGTTATTCACAGTAACGTGCAATGGCAGTCATACTACAA
GTGATAGCAGGGGATGCTATCCAGATGAAAATAAATGAGAAAAAGAAAACCCCTTGAATC
TAAGCTTCTGTGAACCTCATAGTATTTCGCCACTGCTTTCTGTTCTTGAGAATATTGGTA
TATGCCTAGATGAATTGTTGGCTGTTTAGTTCTTGATGCCTGTGTTCTTTACCCTTGGAC
CTTTTATGGTCCAGACTGTCAGTTGTACTCCATTTTCACCTTGTACTTTGCCCTGGCAGA
TCTTCGAGATGACAAGCAGTTCTTTGTGGACCATCCTGGTGCTGTTCCTATCACTACTGC
TCAGGGGGAGGAACTAAAAAAGTTAATAGGCGCACCCTACTACATCGAATGCAGCTCGAA
GACCCAACTAGTACAGCTATCTTCTTACATGTTTGCTTAGTGCATAATGCCATGTAAGAT
GCTGACAGAGTTTTTTTTTCCTGGTCCTTGTCGATTTGCAGAATGTCAAGGGTGTATTTG
ATGCGGCAATAAAGGTGGTACTGCAGCCACCAAAGGCAAAGAAGAAGAAAAAGGCGCAGA
GGGGGGCT

Homology of Contig U35_1791 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None