barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12555_PI390587928Hv_44K_v2CGACCTCCATCTTGCAGATTGTTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAAT515GeneList: orangered4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 3.4144.0571.4800.6740.1390.146
Raw 3216.2636196.7931916.5031484.46399.393116.161



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3745558007e-23744 - 80010057 / 57plus ABC02041 ABC02043 ABC02044 ABC02046 ABC02742 ABC46972
JLOC1JLOC1_14873.19838e-25661 - 72010060 / 60plus
Harvest21ABC020457073e-25565 - 62410060 / 60plus
Harvest21ABC020436173e-25503 - 56210060 / 60plusABC02043
Harvest21ABC020424643e-25349 - 40810060 / 60plus
Harvest21ABC020406263e-25505 - 56410060 / 60plus
Harvest35U35_6146643e-25516 - 57510060 / 60plus
Harvest35U35_6134643e-25349 - 40810060 / 60plus



Contig Sequence (664 bp)

>U35_614 664 Hv_44K_v2
GCACCGCACAAGCCAATCAAGCTCTCTCAGCTTCTGCCGAGCTAGCTCCACGGTTTCCAG
AAAGCAAGCCGAAGCACGAGATCCTCCATGGCACGCGTGGCACTGGTCGCCGTGTTCGCC
GTGCTCGCGGCACTGGCGGTGGCGGAGATGGCGTCCGGGGCGGTGACCTGCGGCGACGTG
ACGTCCTCCATCGCGCCGTGCATGTCCTACGCGACGGGGAAGGCGTCCGCGCCGTCGGCG
GGGTGCTGCAGCGGGGTGAGGAGCCTGAACGGCAAGGCGTCCACCGCGGCCGACCGGCAG
GCGGCGTGCCGCTGCCTGAAGAACCTGGCGGGGTCGTTCAAGGGCATCAGCATGGGTAAC
GCCGCCGGCATCCCCGGCAAGTGCGGCGTGTCCGTCTCCTTCCCCATCAGCACCAGCGTC
GACTGCAACAAGCTTCACTAAGTTACTTATGAGCTTCATCACAGCTAGCCGACTCGGTGT
CTCGGTGTCTGCTGTTGCTGCTTTCTGCATGTGTTCGACCTCCATCTTGCAGATTGTTGA
TCGAATCATCAATAAAATAATGTGTTGAGCTTAATTTTGTATGATGTTATCTGTTATCAA
TAATGATTATAAACTAAAAAAAAAAAAAAAAATGATGCTGGAAATTTTAGCAAGTGCTAT
TAGC



Homology of Contig U35_614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None