- Probe CUST_12554_PI390587928
- Source Contig U35_1792
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12554_PI390587928 | Hv_44K_v2 | GCTGTTGTTCGTGTCAAATCTGAAGTTGACAAACTCTCTGCTAAAGTGTGTGAGTTGGAG | 337 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.162 | 0.336 | 1.094 | 1.730 | 1.025 | 1.538 |
| Raw | 84.443 | 293.350 | 800.315 | 2010.334 | 416.353 | 684.003 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC04631 | 396 | 1e-24 | 338 - 396 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_1792 | 397 | 3e-25 | 338 - 397 | 100 | 60 / 60 | plus |
Contig Sequence (397 bp)
>U35_1792 397 Hv_44K_v2 CCCTCCCCTCCCCCCCTCCGCCACGCGCGTCGCGTCGCTTTCGCCTTTCTCGACGCAACC GAAGCCGGTGGGTGCCGTGCCGAGAGGCCCATAAAGAGGAGGACGGCAGGCCACCTTCGG TGAACTGAAGAGGGTCCTCGCCCAGACTACTGGCTTGGAGCCTGAGAGACAGAGGCTCTT CTTCCGTGGGAAGGAGAAGAGGGACAATGAATTCCTTCACGCATCAGGCGCCAAGGATGG AGCAAAACTGCTTCTGCTTGAGAAACATGTCCCTGCCAATGTGGAACAAAAAGTCGAGCC AGTGATGATGGATGAGAGCATGATGAGGGCTTGTGAGGCTGTTGTTCGTGTCAAATCTGA AGTTGACAAACTCTCTGCTAAAGTGTGTGAGTTGGAG
Homology of Contig U35_1792 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g54040.1 | 260 | 8e-56 | |
| Arabidopsis v10 | None |