barSeed - Barley Seed Development Database

Probe CUST_12547_PI390587928

Source Contig U35_618

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12547_PI390587928	Hv_44K_v2	GACTTCAGAGATACCAATTGGAATTGGAAATAATAAAAAGATGGCACGATGTTTGAGTCC	1166	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.117	2.648	1.146	0.785	0.361	0.620
Raw	761.554	1548.959	568.714	622.292	99.107	185.669

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358845	1792	2e-24	1733 - 1792	100	60 / 60	plus	ABC02346 ABC02347 ABC02348
MLOC	MLOC_37740.3	1524	2e-24	1437 - 1496	100	60 / 60	plus	ABC02347 ABC02348
JLOC1	JLOC1_24471.1	2659	8e-25	1437 - 1496	100	60 / 60	plus
Harvest21	ABC48928	374	3e-25	5 - 64	100	60 / 60	minus
Harvest21	ABC02348	416	3e-25	334 - 393	100	60 / 60	plus	ABC02348
Harvest21	ABC02347	1899	3e-25	1822 - 1881	100	60 / 60	plus	ABC02347
Harvest35	U35_618	1251	3e-25	1167 - 1226	100	60 / 60	plus

Contig Sequence (1251 bp)

>U35_618 1251 Hv_44K_v2
ATCTTTACACCTACGATCTCCCTCTTGCGCTTGAGAAGAAGTATGGAGGCTGGTTAAATG
CAAAGACGGTGGGACTATTTGCAGACTATGCTGACTTTTGTTTTAAGACCTTTGGCGATC
GTGTAAAGCACTGGTTTACATTCAATGAACCAAGGATAGTTGCGCTTCTTGGTTACGACG
TAGGGTCGAATCCTCCTCAAAGGTGCAGCAAATGCACTGCCGGTGGGAACTCAGCAACAG
AACCTTACATTGTTGCTCACAATTTTCTCTTAGCACACGGTTATGCAGTTGCAAGATACC
GGACCAAGTATCAGGCAGCTCAGAAGGGGAAGGTTGGTATAGTTCTGGATTTCAACTGGT
ACGAGGCTCTTACCAACTCAACTGAAGACCAAGCAGCAGCTCAAAGAGCCAGGGACTTCC
ATGTTGGCTGGTTTGTCGACCCGCTGATAAACGGGCATTACCCACAGATAATGCAAGACC
TTGTGAAAGAGAGGTTGCCCAAGTTCACTCCTGCTGAAGCTAAAATGGTCATGGGCTCCG
CGGACTATATTGGGATCAATCAGTACACAGCTAGCCTCATGAAGGGCCAGAAATTGCTGC
AGCAGACGCCGACCAGCTATTCAGCCGATTGGCAGGTTACCTATGCCTTTGAGAGAAATG
GCAAGCCGATTGGACCAAAGGCGAATTCGAACTGGCTCTACATCGTCCCATCGGGGATGT
ATGGGTGCGTGCACTACCTCAGCCAGAAGTACGGGAACCCGCCGATCGTCATAACTGAAA
ACGGAATGGATCAGCCGGGGGGGCTCACGCGCGACCAGTACCTGCGGGACACGACGAGGG
TCCGGTTCTACCGGAGCTACCTCAGCGAGCTGAAGAAGGCCATCGACGGTGGCGCCAACG
TTCTCGGCTACTTCGCGTGGTCTCTCCTCGACAACTTTGAGTGGATGTCCGGCTACTCGT
CCAAGTTCGGCATCGTCTACGTCGACTTCAACAGCCCCAACCTGGATCGGCACCCCAAGG
CGTCGGCCTACTGGTTCAGAGACCTTCTGCGACACTGAATATGGATGGAGCACCTCTGAA
TCAACCAACCTGATGCTGTCATCATCATCATGATCATGATCTTGCTGAGTTTCTGCCTAC
TGTTGTTCGAATGGAACCATGATTCAGACTTCAGAGATACCAATTGGAATTGGAAATAAT
AAAAAGATGGCACGATGTTTGAGTCCTGCAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_618 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49600.2	401	0.0	protein\|Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed
Brachypodium v1_2	Bradi1g10917.1	513	0.0
Arabidopsis v10	AT3G18080.1	512	5e-154	\| Symbols: BGLU44 \| B-S glucosidase 44 \| chr3:6191586-6194124 FORWARD LENGTH=512