barSeed - Barley Seed Development Database

Probe CUST_12546_PI390587928

Source Contig U35_1796

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12546_PI390587928	Hv_44K_v2	TTGATGCCCTTCAAGCAAGCACGATCAGGCAAGCTCAACTGTCAGTTATATAAGTGTAGG	331	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.554	1.565	1.207	0.827	0.288	0.213
Raw	390.994	636.326	416.205	453.978	55.229	45.025

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374349	1541	2e-24	1457 - 1516	100	60 / 60	plus	ABC16426 ABC34609
Harvest21	ABC34609	596	3e-25	32 - 91	100	60 / 60	minus	ABC34609
Harvest35	U35_1796	896	3e-25	332 - 391	100	60 / 60	minus

Contig Sequence (896 bp)

>U35_1796 896 Hv_44K_v2
TGGCGGCTGGATAATCAAGGTCAAGGTCAGCAATGCAGGTGAGCTCAACTCGCTGATGGA
TGACGAGAAGTACTCGAAATTCTGCGAGGAAGAGGACAGCAAGCATTAAGCATGGTGGCT
TCTGAACATCAAGAATATGCGCTTCGACCCTTGTAGGTGTTTGTCATGTGCTGTTGGGCC
CTTTGTACCACCTGCTGTCTCAGCCCAGAAAGGATCAAAACATGGAATAAATGGCATTTG
CCTACCCTGGAGGTCTTGCAAGATCCGAAATCTGTATACCACGAGTTGATTTGTTTCGTT
GCCATGGTTTCGTCTCTAGCGGCCGCTGGCGCCTACACTTATATAACTGACAGTTGAGCT
TGCCTGATCGTGCTTGCTTGAAGGGCATCAAGCAAACGAAACGCAAGAGTGGCTGACACT
AATTACTAATCCGAGCAAATCACTGTGCCTGCATCCAGAACTTAGATATAGTAGACAGAC
TGTTAAAGTTTGAAAATGAAGCGATTAGCTCCTACTAGTCACAGCTGGCCAGTACAGAGG
ACCAAATTCCTAGACGAGCGCATAACAGGCCCCTCAACAGGCCACCAGAATGTAACCTAG
ATACCTGCAGCGTAGACACTTCTGAATGGATGATAATGAGAAAGGGGGTAGGTTCCAGAA
AGCTTCTTGAACTTCATTGACTCAAGATGGACCATAAAGAGGATGTGATCTGTCCACACG
AACACCACATTATTTTCCTCGTCGAGCCCCGGTATCAATATGTCATTCTCCTCAGAATTC
AGAGAAAGCAGCTTGTCCAGTTCAATGGTTCTTCCAAGCCCCCATGAAGCAACACCGCCA
GAATCAGTCTCCATCTTCCACAACTGGATGCTGCAGTCTGTCTGGAGGAGTAAACC

Homology of Contig U35_1796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None