barSeed - Barley Seed Development Database

Probe CUST_12545_PI390587928

Source Contig U35_619

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12545_PI390587928	Hv_44K_v2	TTTACCACTACGATCTCCCTCTTGCACTTGAGAAGAAGTATGGAGGCTGGTTAAATGCAA	722	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358845	1792	2e-24	570 - 629	100	60 / 60	plus	ABC02346 ABC02347 ABC02348
MLOC	MLOC_37740.1	1409	2e-24	274 - 333	100	60 / 60	plus	ABC02347 ABC02348
MLOC	MLOC_37740.2	1322	2e-24	279 - 338	100	60 / 60	plus	ABC02347 ABC02348
MLOC	MLOC_37740.3	1524	2e-24	274 - 333	100	60 / 60	plus	ABC02347 ABC02348
MLOC	MLOC_37740.4	1571	2e-24	565 - 624	100	60 / 60	plus	ABC02347 ABC02348
JLOC1	JLOC1_24471.1	2659	8e-25	274 - 333	100	60 / 60	plus
Harvest21	ABC02349	1333	3e-25	542 - 601	100	60 / 60	plus
Harvest21	ABC02347	1899	3e-25	659 - 718	100	60 / 60	plus	ABC02347
Harvest35	U35_619	1436	3e-25	723 - 782	100	60 / 60	plus

Contig Sequence (1436 bp)

>U35_619 1436 Hv_44K_v2
GTACTAGGCCCCCCCCGCGCGCCCGGCCCTGTCCGTCAGTCTCGACCACGCCACAAAAGA
TGCCCTCCGCCCCCGCCCCACCGCGCCGGCAATTATTTCTCGGGCGCCGCAATTATTAGG
CCGCGCCCACGACCGCGGCCGCTACTACTTGAAGAGCGCGCCGCTGCTCTGGCACCGGCA
CGGCACTAGCCAGCGAGACGCCACTAGTACCAGTCGCAGGCCAGCGGGGGTGGGCGTGAG
CAGCGGACCAGAGTGGTCGGTCGGCGGCGAGATGGCCGCGAGGTCGGCGCTGCTGCTCGC
GCTGGTGGCGGCTGCGGCGGCGGCGTGCCATGGCGTGGGAGCCGCGGGCCCCAACTGGCT
GGGCGGGCTGAGCCGGGCGTCCTTCCCCAAGGGCTTCGTCTTCGGGACGGCGACGTCGGC
GTACCAGGTCGAGGGCATGGCCACCGGCGGCGGCCGCGGGCCCTCCATCTGGGACGCGTT
CGCCCACGTCCCAGGAAACATTGCGGGCAACCAAAATGCGGACGTTACTACGGATCAATA
CCATCGATACAAGGAAGATGTTAACCTCATGAAAGGATTGAATTTCGATGCCTACCGGTT
TTCTATCTCATGGTCCAGAATCTTCCCAGATGGTGACGGAAAAGTTAACCAAGAAGGTGT
CGCGTATTACAATAATCTGATAAACTACCTTCTTCAGAAAGGCATTACTCCTTACATCAA
TCTTTACCACTACGATCTCCCTCTTGCACTTGAGAAGAAGTATGGAGGCTGGTTAAATGC
AAAGACGGTGGGACTATTTGCAGACTATGCTGACTTTTGTTTTAAGACCTTTGGCGATCG
TGTAAAGCACTGGTTTACATTCAATGAACCAAGGATAGTTGCGCTTCTTGGTTACGACGT
AGGGTCGAATCCTCCTCAAAGGTGCAGCAAATGCACTGCCGGTGGGAACTCAGCAACAGA
ACCTTACATTGTTGCTCACAATTTTCTCTTAGCACACGGTTATGCAGTTGCAAGATACCG
GACCAAGTATCAGGCAGCTCAGAAGGGGAAGGTTGGTATAGTTCTGGATTTCAACTGGTA
CGAGGCTCTTACCAACTCAACTGAAGACCAAGCAGCAGCTCAAAGAGCCAGGGACTTCCA
TGTTGGCTGGTTTGTCGACCCGCTGATAAACGGGCATTACCCACAGATAATGCAAGACCT
TGTGAAAGAGAGGTTGCCCAAGTTCACTCCTGCTGAAGCTAAAATGGTCATGGGCTCCGC
GGACTATATTGGGATCAATCAGTACACAGCTAGCCTCATGAAGGGCCAGAAATTGCTGCA
GCAGACGCCGACCAGCTATTCAGCCGATTGGCAGGTTACCTATGCCTTTGAGAGAAATGG
CAAGCCGATTGGACCAAAGGCGAATTCGAACTGGCTCTACATCGTCCCATCGGGGA

Homology of Contig U35_619 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49600.1	505	0.0	protein\|Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed
Brachypodium v1_2	Bradi1g10917.1	513	0.0
Arabidopsis v10	AT3G18080.1	512	2e-172	\| Symbols: BGLU44 \| B-S glucosidase 44 \| chr3:6191586-6194124 FORWARD LENGTH=512