barSeed - Barley Seed Development Database

Probe CUST_12542_PI390587928

Source Contig U35_1799

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12542_PI390587928	Hv_44K_v2	ATCTGAAGCCACTGAGTGACCGTATTCTCATTAAGGTTGCAGAGTCTGAAGAGGAAACTG	609	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54452.1	1133	2e-24	684 - 743	100	60 / 60	plus	ABC00401 ABC28913
MLOC	MLOC_54452.2	1074	2e-24	625 - 684	100	60 / 60	plus	ABC00401 ABC28913
MLOC	MLOC_54452.3	4120	2e-24	309 - 368	100	60 / 60	minus	ABC00401
JLOC1	JLOC1_35047.1	1501	8e-25	738 - 797	100	60 / 60	plus
Harvest21	ABC00401	1087	3e-25	621 - 680	100	60 / 60	plus	ABC00401
Harvest35	U35_1799	1076	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (1076 bp)

>U35_1799 1076 Hv_44K_v2
AACAAAATCCTTATCCCAAGCTCAGTCAGGCTCAGCCCCCGTCTCCTCGGTTTCTCCTCC
CCCACGAACCCTCGCTCCATCCACCACTCTCTCCCTCTCCCACTCCGGCGCGCGCTCAGC
TGAATCCTGCCGCAGGAGCCATGGCGTCGGTGCATCTGTGCGGCCCCAAGGTGGCGTCGG
CGGCGATGGCGAAGCCAGCGCTGGCGGACGGGCTCCGCGTCCCCGCTTCGTCGTCTGCGC
GTCCCGTGCCGACCGGGCGGAGGCTCCGGGGCCTCGTCGTCAGGGCCGCCACCGTCGTCT
CGCCCAAGTATACTTCTGTGAAACCATTGGGAGATAGGGTACTAGTGAAGAGCAAGACCT
CTGAGGATAAAACTGCTGGAGGGATATTGCTTCCAACAACAGCTCAGTCAAGACCACAAG
CAGGGGAGGTTGTTGCAGTTGGAGAGGGGACAAGCTTAGGCAGCAACATCGTCGAGATCA
GTGTTCCGGTTGGTGCCAAAGTTATTTACTCTAAATATGCTGGCACCGAGTTGGAATTCA
ACGATACTACCCACCTCATCATGAAAGAAGATGACATCATTGGTATTCTTGACACTGATG
ACGTGAAAGATCTGAAGCCACTGAGTGACCGTATTCTCATTAAGGTTGCAGAGTCTGAAG
AGGAAACTGCTGGTGGTTTGCTATTGACACAGATGTCGAAAGAGAAGCCTTCTGTTGGAA
CAGTGGTCGCTGTTGGCCCCGGGCCTTTGGGCGATGATGGCAGCAGGACGCCGTTGTCGA
TCACTCCTGGAAGCAGCGTGCTCTACTCCAAGTATGCAGGAAGTGAGTTCAAGGGTTCGG
AAGGCGAGTACATCGTTCTCAGATCATCTGACGTGATAGCTGTGCTGTCATCATAAGCTT
GTCCTGCCCTGCTCATGCGAACTAGGAATTTTGATATTTAGTCCAGAACCTTGTTTGGTT
ATTGCTCTTGCTTGGGATTGGTGAATTGTGAATTGCTTCTTCGCTCTATCGTGGAAATGT
TGCCTGATAGTTTTAATAAGACGACGGCTTAGATTTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g26730.1	246	1e-118	protein\|chaperonin, putative, expressed
Brachypodium v1_2	Bradi4g31220.2	250	6e-139
Arabidopsis v10	AT5G20720.1	253	9e-104	\| Symbols: CPN20, CPN10, CHCPN10, ATCPN21, CPN21 \| chaperonin 20 \| chr5:7015015-7016354 FORWARD LENGTH=253