barSeed - Barley Seed Development Database

Probe CUST_12541_PI390587928

Source Contig U35_620

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12541_PI390587928	Hv_44K_v2	TTATTGTGTGTGTGTGTGACATGATTGGATGCTGTGATTCGCACCCAGATCTGTTTGTTT	1897	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.564	0.879	1.706	1.899	0.890	0.913
Raw	1813.290	4438.567	7617.183	13009.480	2192.827	2417.370

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69905.1	2183	2e-24	2018 - 2077	100	60 / 60	plus	ABC02346 ABC02347
JLOC1	JLOC1_46352.1	2390	8e-25	2170 - 2229	100	60 / 60	plus
Harvest21	ABC02346	2017	3e-25	1898 - 1957	100	60 / 60	plus	ABC02346
Harvest35	U35_620	2086	3e-25	1898 - 1957	100	60 / 60	plus

Contig Sequence (2086 bp)

>U35_620 2086 Hv_44K_v2
CACTTCCACCTGCGAGAGCGAGTGAGTGAGGCCGAGCCCCTGCCGCTGCCGCTGCTCGCT
TGGTACCTGCGGCCTAGCTGAGCAGCTCGGATGGCGCCGCCGCGTCTGCTGCTGCTGCTG
GCCGCCGCCGCGCTGCTCGGATGCGCGCGCGCCGCGACGGGCACGGGCGGGCTGAGCCGG
GCGGCGTTCCCCAAGGGCTTCGTCTTCGGGACGGCCACTTCGGCGTTCCAGGTCGAGGGC
ATGGCCACCGGCGGCGGCCGCGGGCCCTCCATCTGGGACCCCTTCGTCCACACCCCCGGG
AACATTGCGGAGAACGCCAACGCAGATGTCGCCACGGACGAGTACCATCGCTACAAGGAA
GATGTTGATCTCCTGAAAAGCCTGAATTTCGACGCGTATCGGTTTTCAATCTCATGGTCC
AGGATCTTCCCAGATGGGGAGGGGAAAGTCAACAAAGAAGGTGTGACGTATTACAACAAT
CTGATAGACTACGTCATTAAGCAAGGGCTCACTCCTTATGTCAATCTCAACCACTATGAT
ATCCCTCTTGCACTTCAGAAGAAGTATGATGGCTTCTTAAGCCCAAAGATCGTGAACATA
TTTGCAGACTATGCTGAATTTTGTTTCAAGACTTATGGCGATCGAATTAAGAACTGGTTC
ACATTCAATGAGCCAAGGATAGTAGCAGCACTTGGCTTTGATACTGGAACGAACCCCCCT
AACAGGTGCACCAAATGCGCTGCCGGTGGGAACTCAGCAACAGAGCCTTACACTGTTGTC
CATAACATTCTCTTATGTCATGCTACTGCAGTTGCGAGATACCGCAATAAGTACCAGGCA
AGTCAGAAAGGCAAAGTTGGGATAGTTTTGGACTTCAACTGGTATGATGCTGCTACCGAC
TCACCTGCCGACAAAGCAGCAGCCCAAAGGGCCAGGGACTTCCATGTTGGTTGGTTTCTT
GATCCACTACTAAATGGTCAATACCCGAAGACCATGCAAGATATAGTAAAAGAGAGGTTA
CCTAGTTTCACACCTGAACAATCTAAGTTGGTCAAGGGCTCTGTAGATTACATTGGGATA
AATCAGTATACAGCGACCTACATGGCAGACCAACCAACGCTCCAGCAACCACCAACAAGC
TACTCATCTGACTGGCATGTTCAATATATATTTCAGCGAAATGGCGTACCGATTGGACAG
AAGGCGAACTCCAATTGGCTTTACATCGTCCCAACAGGCATGTATGGATGTGTGAACTAC
ATAAGGGAGAAGTACAACAACCCGACGATCATTATATCCGAAAACGGAATGGATCAACCC
GCGAACCTGACCCGCGAGGAGTTCCTGCACGACGCCTCGAGGGTCGAGTTCTACAAGACC
TACCTCGCCGAGCTGAAGAAGGCGATCGACGACGGCGCGAACGTGGTCGGCTACTTCGCC
TGGTCCCTCCTCGACAACTTCGAGTGGCTGTCGGGCTACACCTCCAAGTTCGGCATCGTG
TACGTCGACTTCACCACCCTCAAGCGGTACCCAAAGGACTCGGCCTACTGGTTCAAGAAC
ATGCTGCAGGCGTCGGGGCCCGGCTCGAAAGATGGCACGGTCACTTCTGGCAGCACCCAA
GCTGGCTCTGGCAGCTCGAGCGGCAACCTGGCGGCTGGTTCGGCCACCTCGAGCAGCCCC
AGGGTTCTGCTCTCCCTGCTGGTCTGCTTGTATCTGGCTCTTCCGTCCATCTTCGTGCTC
TCCTTCTAGTGGTGAGTTTATTTTCCATTGGTGTGGCCGTTAGCAGTGCTTGTTAAGCAG
TGGACGCCAGCAGCATATTCGTTTTGAGAATCTGATGCGGCGAAGAGTGTGTTGGAAGAA
CATCCTGAAGGGTCTGGTCCTGTAGCTCAGTTTCACATTATTGTGTGTGTGTGTGACATG
ATTGGATGCTGTGATTCGCACCCAGATCTGTTTGTTTGCACAGACTGGGCCTTAGAGCAA
CTCCGTTTGGGGTCGACGCGAACAAAATGGATGCCCCAACGCGCCGATCCATTTTCAAAA
CACTTCGCGCTGCGCGTTCGCACCGATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_620 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g49610.1	569	protein\|Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed
Brachypodium v1_2	Bradi1g10940.1	571
Arabidopsis v10	AT3G18080.1	512	\| Symbols: BGLU44 \| B-S glucosidase 44 \| chr3:6191586-6194124 FORWARD LENGTH=512