barSeed - Barley Seed Development Database

Probe CUST_12539_PI390587928

Source Contig U35_622

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12539_PI390587928	Hv_44K_v2	CTGATAAACTACCTTCTTCAGAAAGGCATTACTCCTTACATCAATCTTTACCACTACGAT	621	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358845	1792	2e-24	524 - 583	100	60 / 60	plus	ABC02346 ABC02347 ABC02348
MLOC	MLOC_37740.1	1409	2e-24	228 - 287	100	60 / 60	plus	ABC02347 ABC02348
MLOC	MLOC_37740.3	1524	2e-24	228 - 287	100	60 / 60	plus	ABC02347 ABC02348
MLOC	MLOC_37740.4	1571	2e-24	519 - 578	100	60 / 60	plus	ABC02347 ABC02348
JLOC1	JLOC1_24471.1	2659	8e-25	228 - 287	100	60 / 60	plus
Harvest21	ABC02349	1333	3e-25	496 - 555	100	60 / 60	plus
Harvest21	ABC02347	1899	3e-25	613 - 672	100	60 / 60	plus	ABC02347
Harvest35	U35_622	685	3e-25	622 - 681	100	60 / 60	plus
Harvest35	U35_619	1436	3e-25	677 - 736	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_622 685 Hv_44K_v2
TATTTCTCGGACGCCGCAATTATTAGGCCGCGCCCACGACCGCTGCCACTACTTCTTGAA
GAGCGCGCCGCTGCTCTGGCACTGGCACCGGCACTAGCCAGCGAGTAGCGAGCGAGCCGC
CACTAGTACCAGTCGCAGGCCAGCGGGGTGGGTGGGCGTGAGCAGCGGACAAGAGCGCGC
GAGCGGGGCTAGGTTGGTCGGTCGGTCGGCGGCGAGATGGCCGCGAGGTCGGCGCTGCTG
CTCGCGCTGGTGGCGGCGGCGGCGGCGGCGTGCCATGGCGTGGGAGCCGCGGGCGCCAAC
TGGCTGGGCGGGCTGAGCCGGGCGTCCTTCCCCAAGGGCTTCGTCTTCGGGACGGCGACG
TCGGCGTACCAGGTGGAGGGCATGGCCACCGGCGGCGGCCGCGGGCCCTCCATCTGGGAC
GCGTTCGCCCACGTCCCAGGAAACATTGCGGGCAACCAAAATGCGGACGTTACTACGGAT
CAATACCATCGATACAAGGAAGATGTTAACCTCATGAAAGGATTGAATTTCGATGCCTAC
CGGTTTTCTATCTCATGGTCCAGAATCTTCCCAGATGGTGACGGAAAAGTTAACCAAGAA
GGTGTCGCGTATTACAATAATCTGATAAACTACCTTCTTCAGAAAGGCATTACTCCTTAC
ATCAATCTTTACCACTACGATCTCC

Homology of Contig U35_622 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49600.5	299	7e-84	protein\|Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed
Brachypodium v1_2	Bradi1g10917.1	513	1e-82
Arabidopsis v10	AT3G18080.1	512	6e-65	\| Symbols: BGLU44 \| B-S glucosidase 44 \| chr3:6191586-6194124 FORWARD LENGTH=512