- Probe CUST_12531_PI390587928
- Source Contig U35_631
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_12531_PI390587928 | Hv_44K_v2 | GATAGACTGTATAGTGTTCAGTGACACTGTGACAGGGGCAGTGCCGAATGATGTAGTGCG | 472 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_71170.1 | 277 | 2e-24 | 133 - 192 | 100 | 60 / 60 | minus | ABC02066 ABC37280 |
JLOC1 | JLOC1_47270.1 | 932 | 8e-25 | 734 - 793 | 100 | 60 / 60 | plus | |
Harvest21 | ABC37280 | 569 | 3e-25 | 164 - 223 | 100 | 60 / 60 | minus | ABC37280 |
Harvest21 | ABC02066 | 916 | 3e-25 | 714 - 773 | 100 | 60 / 60 | plus | ABC02066 |
Harvest21 | ABC02055 | 650 | 3e-25 | 473 - 532 | 100 | 60 / 60 | plus | |
Harvest35 | U35_41947 | 569 | 3e-25 | 164 - 223 | 100 | 60 / 60 | minus | |
Harvest35 | U35_35328 | 815 | 3e-25 | 145 - 204 | 100 | 60 / 60 | minus | |
Harvest35 | U35_642 | 916 | 3e-25 | 714 - 773 | 100 | 60 / 60 | plus | |
Harvest35 | U35_631 | 658 | 3e-25 | 473 - 532 | 100 | 60 / 60 | plus |
Contig Sequence (658 bp)
>U35_631 658 Hv_44K_v2 CTGCACTTGGCTTTGCTGCTACTGCTCGTTCACTTCCTTCCGATCTCGTACAACCAAGCT CTGCTCCCGGCGAAGGAAGATGTCGACGGTCACCCGCGCCTACCTCGACCAGAGGCTCGC CGCAGCTAAGCGCTGCTCCAGAGAGGCTGCCATGGCCGGAGCCAAGGCCGCGGCCGTCGC CACCGTCGCAGCCGCAGTCCCCACCCTGGCGAGCGTGAGGATGCTGCCGTGGGCCAAGGC GCACCTGAACCCTACCGGCCAGGCGCTCATCATCTCCACCGTCGCCGGGATGGCCTACTT CATCGTCGCCGACAAGACCATCCTCTCCCTGGCCAGGAAGCACTCCTTTCAGGACGCGCC GGAGCACCTCAAGAACACCTCCTTCCACTAATTAGACGCCGTGATTAGCTAGGGCGGGCG CAATAAACTGATCGACGGCCGTACGTGTCTGATGAATGTGTGAATGAATGATGATAGACT GTATAGTGTTCAGTGACACTGTGACAGGGGCAGTGCCGAATGATGTAGTGCGCTTCTCCT CCTTCATGTACTTTTTCTTTTGTTTTCTTCTTCTTCATGCACTTATCTGATGATGATGTG CAGTAGTAATTTATGTGGCCGTGTATTATCTTCAGGAGAATTAGCGGCCGCTCGAGCA
Homology of Contig U35_631 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |