barSeed - Barley Seed Development Database

Probe CUST_12527_PI390587928

Source Contig U35_635

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12527_PI390587928	Hv_44K_v2	ACGTTGTACACTGCTGCAGGCATTTTGAATATTATATCCCCCGCATCGCCGATGAAAAAA	536	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.086	0.152	1.005	1.625	1.158	1.025
Raw	623.806	1660.832	10130.607	24819.940	6210.167	6131.243

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32420.1	617	1e-22	424 - 479	100	56 / 56	plus
Harvest21	ABC02059	636	3e-25	537 - 596	100	60 / 60	plus	ABC02059
Harvest35	U35_635	636	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_635 636 Hv_44K_v2
CACGAGGCTCGTCTCTCTCGATCACACCTCCCATACCTACTTAGCCAGTGAGCAGTAGCC
GTTTCCGTCGAAGATGTCGTCGGTCACCAGCGCCCACCTCGACCACAAGCTCGCCCTCGC
CAAACGCTGCTCCAGAGAGGCGACGCTTGCCGGAGCCAAGGCGGCGGCCGTCGCCACCGT
CGCGTCTGCAGTCCCGACGCTGGCGAGCGTGCGGATGCTGCCGTGGGCCAAGGCCAACCT
CAACCCCACCGGCCAGGCCCTCATCGTCTGCACCGTCGCCGGGATGGCCTACTTCATCGC
CGCCGACAAGACCGTCCTGTCGTTGGCCAGGAGGCACTCGTACGAGAGCGCACCCGACCA
CCTCAAGGACACCTCCTTCCATGGCGCCGCCGCCGTAGCCGCCCATCCCCGTCCGTCGGC
ATTCTTCAGGCCATGAGCTAGTGTCCTGATAAAGTGATAATGTATGCATCGATCGTTGTC
AGAGTCGCAAGGAACTGCTGCTGCAGGCATGAATATCGACTCTCCATATATAATCAACGT
TGTACACTGCTGCAGGCATTTTGAATATTATATCCCCCGCATCGCCGATGAAAAAAAAAA
AAAAAAAAATGGGGATAATTGACGATAATCCCTTTG

Homology of Contig U35_635 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None