barSeed - Barley Seed Development Database

Probe CUST_12523_PI390587928

Source Contig U35_639

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12523_PI390587928	Hv_44K_v2	CCAAGAAACTGCTGCGGAATGAATAATTGAATATCTGTCGTCGAAATTGAAACTACTAAA	486	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73615.1	295	2e-23	72 - 129	100	58 / 58	plus	ABC02071 ABC37189
JLOC1	JLOC1_49012.1	769	1e-23	623 - 680	100	58 / 58	plus
Harvest21	ABC02063	587	3e-25	487 - 546	100	60 / 60	plus
Harvest21	ABC02078	552	4e-24	469 - 526	100	58 / 58	plus
Harvest21	ABC02076	628	4e-24	569 - 626	100	58 / 58	plus
Harvest21	ABC02071	2972	2e-22	2902 - 2956	100	55 / 55	plus	ABC02071
Harvest35	U35_639	587	3e-25	487 - 546	100	60 / 60	plus
Harvest35	U35_648	628	4e-24	569 - 626	100	58 / 58	plus
Harvest35	U35_646	2972	2e-22	2902 - 2956	100	55 / 55	plus

Contig Sequence (587 bp)

>U35_639 587 Hv_44K_v2
GAGGGCCAGGCAGCGCATCTCATCTCACTCTATCGCACTCCTTGTACTGAGCCGTTTCTG
TACAAGATCACGGCCAAGATGTCGTCGACGGCCACCGTCACCGGCGCCAACCCCGAGAAC
AAGCTCGCCCTCGCCAAACGCTGCTCCAGAGAGGCGACGCTCGCCGGAGCAAAGGCGGCG
GCCGTCGCCACGGTCGCGTCTGCGGCGGCAACGCTGACGAGCGTGAGGATGCTGCCGTGG
GCTAAGGCGAACCTGAACCCCACCGGCCAGGCGCTCATCGTCTGCACCGTCGCCGGGATG
GCCTACTTCGTCGCCGCCGACAAGACCATCCTCTCGCTGGCGAGGAGGCACTCGTACGAG
AGCGCCCCCGACCACCTCAAGGACACCTCCTTCCATGGCGCCGCCGCTCGTCCACGTCCA
CCGCCACCGGCGTTCTTCAGCCCATGAGCTAGTGTTCCTGCTAATGTATGCATCGTCGTC
AGTGTCCCAAGAAACTGCTGCGGAATGAATAATTGAATATCTGTCGTCGAAATTGAAACT
ACTAAAAAAAAAAAAAAAAACATCGTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None