barSeed - Barley Seed Development Database

Probe CUST_12521_PI390587928

Source Contig U35_641

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12521_PI390587928	Hv_44K_v2	TCTTGATACTAGCGACATATTTTTTGTTGTTGTTGTTGTTTGGCAGAGGCGACGCTTGCC	196	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.162	0.333	1.327	1.701	1.040	0.993
Raw	7.154	25.044	87.665	165.443	36.368	40.403

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (906 bp)

>U35_641 906 Hv_44K_v2
GCTCGTCTCTCTCGATCACACCTCCCATACCTACTTAGCCAGTGAGCAGTAGCCGTTTCC
GTCGAAGATGTCGTCGGTCACCAGCGCCCACCTCGACCACAAGCTCGCCCTCGCCAAACG
CTGCTCCAGAGGTCGGTCGGTGATTAATCAGCATCCACTCCTTCAGAGTTCAGTTGAGCA
TGTACCGGAGCATCCATCTTGATACTAGCGACATATTTTTTGTTGTTGTTGTTGTTTGGC
AGAGGCGACGCTTGCCGGAGCCAAGGCGGCGGCCGTCGCCACCGTCGCGTCTGCAGTCCC
GACGCTGGCGAGCGTGCGGATGCTGCCGTGGGCCAAGGCCAACCTCAACCCCACCGGCCA
GGCCCTCATCGTCTGCACCGTCGCCGGGATGGCCTACTTCATCGCCGCCGACAAGACCGT
CCTGTCGTTGGCCAGGAGGCACTCGTACGAGAGCGCACCCGACCACCTCAAGGACACCTC
CTTCCATGGCGCCGCCGCCGTAGCCGCCCATCCCCGTCCGTCGGCATTCTTCAGGCCATG
AGCTAGTGTCCTGATAAAGTGATAATGTATGCATCGATCGTTGTCAGAGTCGCAAGGAAC
TGCTGCTGCAGGCATGAATATCGACTCTCCATATATAATCAACGTTGTACACTGCTGCAG
GCATTTTGAATATTATATCCCCCGCATCGCCAAAAAAAAAAAAAAACCTCCAAAATGGGG
ATAATTGACGATAATCCCTTTGTTGGCCGATCCTTGCTCACAGGCCCCAAAATGAAGAGG
GGCCAAAACCTAGAAAGAGGATGCCTCACTCTGTAACTTTTACTTGCAAATGTGCTATAA
AATCATCGCCACGCCGCGATGTAACAGACGGTATCGTCGTTGGACGCANAAAAAAAAAAA
AAAAAA

Homology of Contig U35_641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None