barSeed - Barley Seed Development Database

Probe CUST_12520_PI390587928

Source Contig U35_642

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12520_PI390587928	Hv_44K_v2	GCAGTAGTAATTTATGTGGCCGTGTATTATCTTCAGGAGTATTATCTTATTATCTTGCCA	840	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71170.1	277	3e-21	2 - 61	97	58 / 60	minus	ABC02066 ABC37280
JLOC1	JLOC1_47270.1	932	2e-21	865 - 924	97	58 / 60	plus
Harvest21	ABC37280	569	3e-25	37 - 96	100	60 / 60	minus	ABC37280
Harvest21	ABC02066	916	3e-25	841 - 900	100	60 / 60	plus	ABC02066
Harvest35	U35_41947	569	3e-25	37 - 96	100	60 / 60	minus
Harvest35	U35_642	916	3e-25	841 - 900	100	60 / 60	plus

Contig Sequence (916 bp)

>U35_642 916 Hv_44K_v2
GCTACTACTACTTACTCATCTTTTTAGCTACTGCACTTGGCTTTGCTGCTACTGCTCGTT
CACTTCCTTCCGATCTCGTACAACCAAGCTCTGCTCCCGGCGAAGGAAGATGTCGACGGT
CACCCGCGCCTACCTCGACCAGAGGCTCGCCGCAGCTAAGCGCTGCTCCAGAGGTAGGTA
ACCAACGAGCGACGGCCGGTTCCGTTATGCATTGCGGCTTATTTATGTGCTGTCTGTGTC
TGTCGGAACTTGATTGTGATTAACATGTTACATGTGTGTGCTGCAGAGGCTGCCATGGCC
GGAGCCAAGGCCGCGGCCGTCGCCACCGTCGCAGCCGCAGTCCCCACCGTAAGTACAGCC
AGAAAGCCAGCCATTCGGTTCTTGGAGGAGATCGCGCGCTCCATAGTTCATCGCATGTCT
CATGAATCTGCTATCCATGATTTCAGCTGGCGAGCGTGAGGATGCTGCCGTGGGCCAAGG
CGCACCTGAACCCTACCGGCCAGGCGCTCATCATCTCCACCGTCGCCGGGATGGCCTACT
TCATCGTCGCCGACAAGACCATCCTCTCCCTGGCCAGGAAGCACTCCTTTCAGGACGCGC
CGGAGCACCTCAAGAACACCTCCTTCCACTAATTAGACGCCGTGATTAGCTAGGGCGGGC
GCAATAAACTGATCGACGGCCGTACGTGTCTGATGAATGTGTGAATGAATGATGATAGAC
TGTATAGTGTTCAGTGACACTGTGACAGGGGCAGTGCCGAATGATGTAGTGCGCTTCTCC
TCCTTCAGGTACTTTTTCTTTTGTTTTCTTCTTCTTCATGCACTTATCTGATGATGATGT
GCAGTAGTAATTTATGTGGCCGTGTATTATCTTCAGGAGTATTATCTTATTATCTTGCCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_642 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None