barSeed - Barley Seed Development Database

Probe CUST_12516_PI390587928

Source Contig U35_646

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12516_PI390587928	Hv_44K_v2	GTGCCAGTTTTGTCATATACCGTGTCAAAATGCGCAAATTTTGTCATATGTAAACAATGT	2500	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.469	1.256	1.136	0.860	0.364	0.387
Raw	4201.053	5640.917	4487.050	5388.383	794.873	926.484

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353866	3005	2e-24	2908 - 2967	100	60 / 60	plus	ABC02071
MLOC	MLOC_37834.1	2852	2e-24	2595 - 2654	100	60 / 60	plus	ABC02071
JLOC1	JLOC1_24540.1	2817	8e-25	2596 - 2655	100	60 / 60	plus
Harvest21	ABC02071	2972	3e-25	2501 - 2560	100	60 / 60	plus	ABC02071
Harvest35	U35_646	2972	3e-25	2501 - 2560	100	60 / 60	plus

Contig Sequence (2972 bp)

>U35_646 2972 Hv_44K_v2
TGGCGCAGGGGGCCGCCTGCTCTCTTCCAGCGTTGATGGGTCGGTGGCGGAATGGGATCT
CTTCCACCTGCAGCAAAAGACTGTCCTAGATACTATTGGGGTACCGGTCTGGCAGATGGC
CATGGAGCCTGCATATGATCAATTGATTTCTGGAAATAAAAGCTCAGGATGCACTGCCAA
TGGCCATGCAAATCATAACGGATCTACCGACTCTGAATTAAGTTATGTTGATGATGGTCA
GAGCTCTGATGATGAAGATGATTCTGCAAAGACAAGCTCTTCGTATCGTGCGAATGAGTT
TCCGCGTTTGGCTCTGGCATGTGACGATGGTTCTGTACGCCTGTATAATGTGCCTGAATC
TGGCCCACTGACCTACTATAGATCTCTTCCAAGAGTGAGCGGACGAGTTTTGAGTGTGAC
ATGGAGTAATAATGCCAAATTCATATTTTCTGGAAGCAGCGATGGGTTAATTAGATGCTG
GGATTCAACAATTTTCCATGAAAAGTATCGCATCACTGCTGGATTAGGGGGTGCTGGTAG
TGGAAGTGAACTTTGTATATGGTCATTACTATTTCTGAGGTGCGGAACCCTTGTTAGCGG
AGATAGTTCTGGGAGCGTTCAATTTTGGGATAACCGCCATGGAACTCTTCTTCAAGCTCA
CACTTACCATAAAGGCGATGTTAATGCACTAGCAACTGTGCCTAGTCAGAACCGGGTATT
TTCTGCAGGATCTGATGGGCAGGTAATTTTGTACAAGGCATCGAAAGATGGGTTCAGTGC
TCATAATGACAAGGCGGCTGAAGAGCAAATGCACAAGTGGGTCTATGTAGGATATGTTAG
GGCCCATTCTCATGATGTAAGGGCATTGACTATGGCCGTGCCAATATGCAAAGAAGATGC
TGTGCCAGAGGAGAAGGTGGTGAAGATACGTCGCAAAGATGAATTCAGTTACCACAAGTG
GGCGCATCTGGGTGTACCGATGCTCATTTCTGGTGGGGATGACACCAAGCTGTTTGCTTA
TTCTGCACGGGACTTCACTCAGTACTCACCTCATAACTTCTGCCCTGCGCCTCAACGTCC
ATTGATAAATCTAGCAAGAGATTGCACAGTTAATGGAGACTCTGTGATGCTTGTCCAGTC
TGTTAACTGCTTGGATGTTCTACTTGTGTCAGTTCAGAACAAACAGGCTCCAAGTACATC
GTCCAGAGGAGATGCTACGATACGACAAGTTGTTCATCTTAAAAGCAAGGGGTCCAGAAA
AATTATAGCAAGTGCTGTTTCCACCAATGGAATGCTATTTGCCTACTCAGATTGTGTGAA
ACCCTGCCTTTTTGCACTAAGACACAAGGGTGGAAAGAAGTTCTCTCTAGATAAAATGGA
GTTGCCAAAGGGAATACCATCTTCTCAGAGCATGATGTTTACTGCTGATTCATCCAGTTT
GCTTCTATCTTGCAATGATGGGAAAATATATGTTGTGGATATTGCCTCAAGAAAAATTTC
AAATATATTTCACCCTACAAGAAAGATCGATGGAGCAAAAACTTCTTCCAAAGAACAACC
TGTCACAAAAATGTTTGTGAGTGCTGATGGGCAGTGGGTCGCTGCAGCTAACTGCTTTGG
GGATGTCTACATATTTAACCTTGAGATCCAGAGGCAGCACTGGTTCATACCGAGAATGAA
TGATGGTTCGGTTACAGCTGGTGGTTTTTGTCCCAAGAACAATGCCCTTGTTATAACTAC
CTCTAGAAATGAGGTATATGTATTTGATGTGGAAGCAAAAGAACTGGGCGAATGGTCTAA
GCGTCATACACACGAGTTACCGAAAAGATTCCAAGAGTTTCCTGGAGAGGTCATTGGCCT
CTCATTTCATACACTGAGCCTATTTTCAGTCATGGTATACAGTGCAAGGGCAATGTGCAA
GATTGATTTTGGATTGCCAGTTGTTCAGGATGTCCAATTGTCAAAATCAGAGAAGGCAGA
CTCACAAAAGGCTAAGGACATTAAATCAGAGAAGGGAGGCTTACAAAAGGCTACAAAAAC
AAAGGTTAAGCGGAAACATCGTGATGAAGATTTGGAACAAGAGAAAAGGAATAACTTCAC
CTTCTTTGCCTTTAAAGATCCGGTGCTGTTTGCTGGCCACCTACTGGACAGTTCACTTCT
GGTAGTAGAGAAGCAATGGATGGATGTTGTCAAAGGATTCGGCCCGCCGGTCCACAGACA
CATATACGGGACATGATCCATCCATCCATAGTAGTATTTGAACTTGTGGCCCTCGTAACA
GGCAGGCAGCCCATTCATTTTTATCACCGCCATGAAATGTTCCCATCCCCAAGCAAGTTG
TCTGGCATGACACTTCAAAGGTATAGCAGTACATAATGTCTGCTATTATCCATCTGGCGC
GATAGCAGTCCGGGTCTATTTTTCTTTGGTGGCTTTTATTTCTTGAGTAGCATCGTTGTA
TTCTTTTTCTTCACTGAAGTATGTTAGTGGACCCTTCACAGTGCCAGTTTTGTCATATAC
CGTGTCAAAATGCGCAAATTTTGTCATATGTAAACAATGTATCATCACTACTGTTATGTC
AACATATCTCGTTTGTCTAAAAAAAAAAAAAAAAAACTCGAGGCAACGCTGACGAGCGTG
AGGATGCTGCCGTGGGCTAAGGCGAACCTGAACCCCACCGGCCAGGCGCTCATCGTCTGC
ACCGTCGCCGGGATGGCCTACTTCGTCGCCGCCGACAAGACCATCCTCTCGCTGGCGAGG
AGGCACTCGTACGAGAGCGCCCCCGACCACCTCAAGGACACCTCCTTCCATGGCGCCGCC
GCTCGTCCACGTCCACCGCCACCGGCGTTCTTCAGCCCATGAGCTAGTGTTCCTGCTAAT
GTATGCATCGTCGTCAGTGTCCCAAGAAACTGCTGCGGAATGAATAATTGAATATCTGTC
GTCGAAATTGAAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_646 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g52470.1	808	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g09530.1	816
Arabidopsis v10	AT4G07410.1	815	Transducin family protein / WD-40 repeat family protein \| chr4:4201465-4205136 REVERSE LENGTH=815