barSeed - Barley Seed Development Database

Probe CUST_12514_PI390587928

Source Contig U35_648

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12514_PI390587928	Hv_44K_v2	CCAAGAAACTGCTGCGGAATGAATAATTGAATATCTGTCGTCGAAATTGAAACTACTACT	568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73615.1	295	2e-24	72 - 131	100	60 / 60	plus	ABC02071 ABC37189
JLOC1	JLOC1_49012.1	769	8e-25	623 - 682	100	60 / 60	plus
Harvest21	ABC02078	552	3e-25	469 - 528	100	60 / 60	plus
Harvest21	ABC02076	628	3e-25	569 - 628	100	60 / 60	plus
Harvest21	ABC02063	587	4e-24	487 - 544	100	58 / 58	plus
Harvest21	ABC02071	2972	2e-22	2902 - 2956	100	55 / 55	plus	ABC02071
Harvest35	U35_648	628	3e-25	569 - 628	100	60 / 60	plus
Harvest35	U35_639	587	4e-24	487 - 544	100	58 / 58	plus
Harvest35	U35_646	2972	2e-22	2902 - 2956	100	55 / 55	plus

Contig Sequence (628 bp)

>U35_648 628 Hv_44K_v2
GGCAGCGCATCTCATCTCACTCTATCGCACTCCTTCTACTGAGCCGTTTCTGCACAAGAT
CACGGCCAAGATGTCGTCGACGGCCACCGTCACCGGCGCCAACCCCGAGAACAAGCTCGC
CCTCGCCAAACGCTGCTCCAGAGAGGCGACGCTCGCCGGAGCAAAGGCGGCGGCCCTCGC
CACGGTCGCGTCTGCGGCGGCAACGGTGAGCTAGCTCCTTTGTCTAACATGACTTGTTGA
TTTTCGTTCACGTTGGACTCTGGTTTCCATAACTGAACTACTATTAATCACGCAGCTGGC
GAGCGTGAGGATGCTGCCGTGGGCCAAGGCGAACCTGAACCCCACCGGCCAGGCGCTCAT
CATCTGCACCGTCGCCGGGATGGCCTACTTCGTCGCCGCCGACAAGACCATCCTCTCGCT
GGCGAGGAGGCACTCGTACGAGAGCGCCCCCGACCACCTCAAGGACACCTCCTTCCATGG
CGCCGCCGCTCGTCCACGTCCACCGCCACCGGCGTTCTTCAGCACATGAGCTAGTGTTCC
TGCTAATGTATGCATCGTCGTCAGTGTCCCAAGAAACTGCTGCGGAATGAATAATTGAAT
ATCTGTCGTCGAAATTGAAACTACTACT

Homology of Contig U35_648 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None