barSeed - Barley Seed Development Database

Probe CUST_12511_PI390587928

Source Contig U35_651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12511_PI390587928	Hv_44K_v2	CTGAAATCATGGTCCTGTTGCTTGCTTACTGTTAGTTTGCTGCCTGTTTACCTGAAAAAA	699	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.695	1.481	1.349	0.852	0.340	0.383
Raw	29786.867	40378.433	32311.767	31558.800	4486.447	5555.950

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_28589.1	1009	1e-22	772 - 827	100	56 / 56	plus
Harvest21	ABC00166	759	3e-25	694 - 753	100	60 / 60	plus	ABC00166
Harvest35	U35_651	765	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (765 bp)

>U35_651 765 Hv_44K_v2
ATCAGGGCGCCGCCTAGGTGAGTCCTCCGCCTCCGCCTCCGCGTCCCGCTCGCTCCCGCC
TCTCTCCTCCTCCGCCGCCGCCGTCGCCGTCGCCCGCGCAGCCGCGAAATGCCGTTCAAG
AGGTTTGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTC
GTCGTCATCGTCGACGTTGTCGACCAGAACAGGGCACTTATTGATGCACCGGACATGATC
CGCTGCCAGATGAACTTCAAGCGGCTCTCCCTGACCGACATCAAGATTGACATCAAGCGG
ATCCCTAAGAAGGCAACTCTGATCAAAGCTATGGAGGAAGCTGATGTGAAGACCAAGTGG
GAGAACAGTTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCATCGCTCAATGAC
TTTGACAGGTTCAAGGTCATGCTTGCCAAGATCAAGAGGGGAGGAGCTATCAGGCAGGAG
CTAGCGAAGCTTAAGAAGGAGGTTGCCGCTGCTTAGATCACTTTGGTGGGCAACCTGTTG
AGATTTTGTTGAGCGATGTATCTTATTCCCGTGCTCGTGAAATATTGTGCGAATTACTCA
TCACTGGTATTGGTGGATCAGATGAAATTTTAGTATTAAAACTTATTCTTGAGGATCTGA
GAAAAAAATAGTATGTTATGTATCTGTTATGTGTGAGGGCTGAAATCATGGTCCTGTTGC
TTGCTTACTGTTAGTTTGCTGCCTGTTTACCTGAAAAAAAAAAAA

Homology of Contig U35_651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g40880.1	135	8e-68	protein\|ribosomal protein L14, putative, expressed
Brachypodium v1_2	Bradi1g06366.1	135	6e-69
Arabidopsis v10	AT2G20450.1	134	3e-57	Ribosomal protein L14 \| chr2:8813923-8815071 FORWARD LENGTH=134