- Probe CUST_12503_PI390587928
- Source Contig U35_31163
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12503_PI390587928 | Hv_44K_v2 | TACAGATGCTGTTTTTCTATTTGCGCCATAGTACCTCTCAGCAAGGGGATTAACAAAAAA | 413 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.285 | 1.997 | 1.094 | 0.814 | 0.439 | 0.476 |
| Raw | 823.915 | 1113.015 | 533.538 | 615.543 | 120.581 | 140.634 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6659.3 | 2852 | 2e-23 | 2747 - 2804 | 100 | 58 / 58 | plus | ABC31311 |
| MLOC | MLOC_6659.6 | 1735 | 3e-21 | 1682 - 1735 | 100 | 54 / 54 | plus | ABC31311 |
| JLOC1 | JLOC1_4345.1 | 1435 | 1e-23 | 1278 - 1335 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC31311 | 479 | 3e-25 | 414 - 473 | 100 | 60 / 60 | plus | ABC31311 |
| Harvest35 | U35_31163 | 479 | 3e-25 | 414 - 473 | 100 | 60 / 60 | plus |
Contig Sequence (479 bp)
>U35_31163 479 Hv_44K_v2 CACCGCTGTCGCAACGGATCTCGGCACCCAGGACGCAATCAAGGGAAATTCACGGGCACT AGCCACCGTCTCTGCGATAATCGACGGCACCGGCTCTGTCGGCGCAGCATTGGGGCCCTT GCTGACGGGGTACATCTCGACAAGAGGATGGAACAGCGTGTTCTTCATGCTGATTGTGTC CATATCCCTCGCCCTCGTGTTTTTGATACGCATAGCGAGGGGCGAGATAGTCGCCAAGAT CGGGGCCAGGCGTTAGGTTTTATTTGCTGGCGCTTCGGAACCGCGAGAGGCCTTTTTCGT GGGAGTTGTACAAGTCTGTAGGAGTTAGGTTACGGCCATTTCTTGGTTCATGTAAATTGG TTGGTTGGTTGGTTGGATGCACATATGTACACCCGTGGAAATGGAAGGCTGGATACAGAT GCTGTTTTTCTATTTGCGCCATAGTACCTCTCAGCAAGGGGATTAACAAAAAAAAAAAA
Homology of Contig U35_31163 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |