barSeed - Barley Seed Development Database

Probe CUST_124_PI415269222

Source Contig CA592494

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_124_PI415269222	Hv_44K_v2	ACTCTAAACCCTGTAGCAGACGCACAGTAGCTTGGTAGGAAGCCATGGCGAGGAAAGCGG	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66801.1	1011	2e-24	192 - 251	100	60 / 60	plus	ABC04435
JLOC1	JLOC1_44057.1	967	8e-25	148 - 207	100	60 / 60	plus

Contig Sequence (519 bp)

>CA592494 519 Hv_44K_v2
CACAGCCAGAGTTAACTCTAAACCCTGTAGCAGACGCACAGTAGCTTGGTAGGAAGCCAT
GGCGAGGAAAGCGGCGGTGATCGCCACGCTGCTGGCCCTGAACCTGCTCTTCTTCACCGT
CGCTGACGGCTGCGGCTGCCAGCTGCCTAANCCGCNGTANGGAGGAGGGGGCGGCGGCGG
TGGGGGANGAGGGAGCGGTGGCTGCCCGATCGACACGCTGAAGCTTGGGGCGTGCGCGAA
CGTGCTGGGTGGGCTNATCAAGCTGCGGCCGGTGACGACGCCGAAGCAGACCTGCTGCTC
GCTGCTCCAGGGGCTGGCGGACCTGGATGCGGCCGTGTGCCTGTGCACGGCGCTCAAGGC
CAACATCCTGGGCATCCACCTCAACGTCCCCGTCGACCTCAGCCTCCTCGTCAACTACTG
CGGCAAGAACGTCCCCGCAGGCTTCCAGTGCACCTCCTAGAAGGGGGTGCGATTTTGAGC
AGGCCATGCATGGCTGACTCAGAGAAGTTGTGTGGGTTC

Homology of Contig CA592494 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None