- Probe CUST_12497_PI390587928
- Source Contig U35_31169
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12497_PI390587928 | Hv_44K_v2 | ACATTTGAGGACATCTCTAGCTAGATACAGGCTTGAAATAACCTTGATGATGACAATAGC | 421 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.351 | 0.342 | 1.722 | 2.545 | 0.974 | 1.085 |
| Raw | 3.236 | 5.707 | 33.771 | 71.796 | 11.102 | 13.264 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64446.2 | 1986 | 2e-24 | 1905 - 1964 | 100 | 60 / 60 | plus | ABC31318 |
| MLOC | MLOC_64446.1 | 2218 | 2e-24 | 2004 - 2063 | 100 | 60 / 60 | plus | ABC31318 |
| JLOC1 | JLOC1_42316.1 | 2158 | 8e-25 | 1898 - 1957 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31318 | 519 | 3e-25 | 422 - 481 | 100 | 60 / 60 | plus | ABC31318 |
| Harvest35 | U35_31169 | 519 | 3e-25 | 422 - 481 | 100 | 60 / 60 | plus |
Contig Sequence (519 bp)
>U35_31169 519 Hv_44K_v2 GCAGAAATGGAGAGAAGGATAGGCGGTGAAACTCCAGCAACGGTGGGTTATTACAGTGAC CATCTCCTGCAGCAGATGTTCGCCAGAGTTCAGGCCGATGACGCCGGAGGAGGCCGGCGG CTACCATCACCAAGACGACTTCTTCGCCGACCTCACAGAGCTGGACTCGGACCCCGTCAG CCTCATCTTCTCCGCGGAGTACATGGAGGCCAGACCTGACAAGGAGAAGGCAGCAGCCAT GGACGGCGTCGATTCCTTATTCATGACGGACTGGGCGCCTGCTAGTGCTGCTGCTGTTAC TACTTCTGCAGGGAGCTCATTTGAGCAAGGGGGCATAGGTTTTTGAGTTTTGACATCAGT TAGTTACCTTAAAACATACCAGCAGGCTTGGACAATCGATGCATGTGTAAGTGCAAACAC CACATTTGAGGACATCTCTAGCTAGATACAGGCTTGAAATAACCTTGATGATGACAATAG CAAAAGAAGAAGAAGAANAGATAAAAAAAAAAAAAAAAA
Homology of Contig U35_31169 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |