barSeed - Barley Seed Development Database

Probe CUST_1248_PI390587928

Source Contig U35_28640

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1248_PI390587928	Hv_44K_v2	TATCAGCTAGAAATGAAGTTGGTGACACGTTCCTCCATATGGCACTGACTGGCTTCAGAA	483	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375093	3219	2e-24	1019 - 1078	100	60 / 60	plus	ABC06769 ABC06770
MLOC	AK371869	2786	2e-24	1557 - 1616	100	60 / 60	plus	ABC04961
MLOC	AK249068.1	2965	7e-23	1709 - 1768	98	59 / 60	plus	ABC04958 ABC04961
MLOC	MLOC_51236.4	1480	7e-23	1088 - 1147	98	59 / 60	plus	None
MLOC	MLOC_51236.5	720	7e-23	320 - 379	98	59 / 60	plus	None
MLOC	MLOC_51236.2	1390	7e-23	997 - 1056	98	59 / 60	plus	None
MLOC	MLOC_51236.3	1701	7e-23	1299 - 1358	98	59 / 60	plus	None
MLOC	MLOC_9632.6	991	7e-23	273 - 329	100	57 / 57	plus	None
MLOC	MLOC_9632.4	1286	7e-23	566 - 622	100	57 / 57	plus	ABC04958
MLOC	MLOC_9632.1	1393	7e-23	675 - 731	100	57 / 57	plus	ABC04958
MLOC	MLOC_7446.1	2218	7e-23	1893 - 1952	98	59 / 60	minus	ABC04961 ABC38491
MLOC	MLOC_7446.2	1593	7e-23	1267 - 1326	98	59 / 60	minus	ABC04961
MLOC	MLOC_7446.3	2119	7e-23	1793 - 1852	98	59 / 60	minus	ABC04961 ABC38491
JLOC1	JLOC1_32715.4	1657	4e-23	1255 - 1314	98	59 / 60	plus
JLOC1	JLOC1_32715.3	1845	4e-23	1443 - 1502	98	59 / 60	plus
JLOC1	JLOC1_32715.2	1520	4e-23	1118 - 1177	98	59 / 60	plus
JLOC1	JLOC1_32715.1	2132	4e-23	1730 - 1789	98	59 / 60	plus
JLOC1	JLOC1_4909.2	1391	4e-23	268 - 327	98	59 / 60	plus
JLOC1	JLOC1_4909.1	1813	4e-23	268 - 327	98	59 / 60	plus
Harvest21	ABC27619	654	3e-25	484 - 543	100	60 / 60	plus
Harvest21	ABC04959	676	3e-25	334 - 393	100	60 / 60	plus
Harvest21	ABC04960	2518	1e-23	1160 - 1219	98	59 / 60	plus
Harvest21	ABC38090	640	2e-22	218 - 272	100	55 / 55	plus
Harvest35	U35_28640	654	3e-25	484 - 543	100	60 / 60	plus
Harvest35	U35_16106	1879	3e-25	334 - 393	100	60 / 60	plus
Harvest35	U35_16108	1487	1e-23	1297 - 1356	98	59 / 60	plus
Harvest35	U35_16107	640	2e-22	218 - 272	100	55 / 55	plus

Contig Sequence (654 bp)

>U35_28640 654 Hv_44K_v2
GGCTCCTCGGGAGGCAACCCCTGCTGGTGTTCGGCGAGGGGGAGTACGGCGTGACCGACG
TCCTCTACGCCGCCGCCAGGAGCAGGCGCCCGGAGGTGTTCCGGATGTTGCTCAACGCGG
TGCTCTCTCCGGCTGGGGATTCGGGAGATACCCCTGCTGCTGCTACCAATCGTGGGGGGT
ACATGTTCAGGCGCGAGATGATGAACCGGGCAATGCACGCCGCGGCGAGGGGCGGTGACC
TGGAGATCCTCACGGAGCTCCTGCAGGGTTGCTCCGATGCCGCTGCGTACCAGGACGCGC
AGGGCGCCACCATCTTGCATGCCGCGGCTGCAAGGGGCCAAGTCGAGGTTGTGAAGTATC
TGATTGTCGCTTTTGACATCGTCAACTCTGTAGATGAGCAAGGGAATACAGCGTTGCATA
TAGCAGCATTCCGAGGTCATTTACCGGTGGTGGAAGCCCTGATGACTGCATCACCATCAC
TTATATCAGCTAGAAATGAAGTTGGTGACACGTTCCTCCATATGGCACTGACTGGCTTCA
GAACTCTTGGCTTCCGAAGGCTTGATCGTCAGATGCAGCTCACGAAGCATCTGGTCTCTG
GATCAATCATGGATGTCAGCGATGTAATCAACGTGCAGAACGACGATGGAAGGA

Homology of Contig U35_28640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g23320.2	671	4e-110	protein\|expressed protein
Brachypodium v1_2	Bradi2g30410.1	655	7e-109
Arabidopsis v10	AT3G01750.1	664	1e-63	Ankyrin repeat family protein \| chr3:270615-272691 FORWARD LENGTH=664