barSeed - Barley Seed Development Database

Probe CUST_12485_PI390587928

Source Contig U35_31176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12485_PI390587928	Hv_44K_v2	ATGGCAGGTTCGGTTGAAAGGTATAGAGTACATGCGGTTTGATATATTGTAAAAGAGGGG	304	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366189	3870	7e-23	2034 - 2093	98	59 / 60	plus	ABC05478 ABC05479 ABC08824
MLOC	MLOC_67374.1	2689	7e-23	2541 - 2600	98	59 / 60	plus	None
MLOC	MLOC_67374.2	2531	7e-23	2407 - 2466	98	59 / 60	plus	None
MLOC	MLOC_67374.3	2510	7e-23	2386 - 2445	98	59 / 60	plus	None
JLOC1	JLOC1_44482.3	2593	4e-23	2412 - 2471	98	59 / 60	plus
JLOC1	JLOC1_44482.2	2576	4e-23	2395 - 2454	98	59 / 60	plus
JLOC1	JLOC1_44482.1	2643	4e-23	2462 - 2521	98	59 / 60	plus
Harvest21	ABC31328	366	3e-25	305 - 364	100	60 / 60	plus
Harvest35	U35_31176	366	3e-25	305 - 364	100	60 / 60	plus

Contig Sequence (366 bp)

>U35_31176 366 Hv_44K_v2
CGGTACGCGCAGATCCTGTCCGAGGAGGCCGGCATCGAGTGGGCCGGGTTCCAGAGGAGG
GTCAGGGCCATGGTGGACGAGTACAAGCGGGTCCGGGCCCGGCCCAGGGGCCGGACCGTC
TACCGGCAGCCCAGGACGCCCGGGTGCATGTGCAGGGCCGGTGGCGACGGCAGCGTCGAC
TTCTGAATTTTCTATTCTGATGAAACGACACGATGGCCGGCCATTCTTCTCCTTTTGCGG
TTACTATTTGTTTCGTTCTTTTGTGCATAGCTTAACTTGTAATCTTTTCTGTAGCTCTAG
GAACATGGCAGGTTCGGTTGAAAGGTATAGAGTACATGCGGTTTGATATATTGTAAAAGA
GGGGGT

Homology of Contig U35_31176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None