- Probe CUST_12477_PI390587928
- Source Contig U35_43158
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_12477_PI390587928 | Hv_44K_v2 | TGACGATTGGATCCAACACCCCCGATCGATGATGCTGATTAACTCGATTCCTATAAAAAA | 10 | GeneList: lightyellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.081 | 0.443 | 1.263 | 2.046 | 1.275 | 1.006 |
Raw | 8.788 | 75.657 | 191.540 | 497.996 | 106.391 | 90.289 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_51764.1 | 662 | 9e-22 | 438 - 492 | 100 | 55 / 55 | minus | ABC39503 |
Harvest21 | ABC39503 | 496 | 3e-25 | 11 - 70 | 100 | 60 / 60 | minus | ABC39503 |
Harvest35 | U35_43158 | 496 | 3e-25 | 11 - 70 | 100 | 60 / 60 | minus |
Contig Sequence (496 bp)
>U35_43158 496 Hv_44K_v2 TTTTTTTTTTTTTTTTATAGGAATCGAGTTAATCAGCATCATCGATCGGGGGTGTTGGAT CCAATCGTCAAACCCGGAACGCATATGTGTATCTATGCATGTATGTATATGCACGTCTCT ATAATTAAAATTGAATCTTTGTTTTTTTGCTTTGGTTTGGTTTGTAGCAGCAGTCACCTC CTCATCTCATGTCATCGCATCTCATTGAGATGCCAATGCCAGATGCCGATGCCGGCCTAC CTATATGTACAGCAATGGATGTATGTTACAATGGTTTCTTTGGGTTGGGTTGGGTTGGTG ATCACCTCACGCCGCCGCCCCTCTCACATCTCCTTCTTCTTCTTCTTCTGCTGCTGCTGC AGGGAGGCGCCGTCGTCGTCGTCGTCATCGCAGAGGACGCCGCGGGTGACGCCGTACCAG TGGAGGAACACCCANAGCATGGCGGCGTTGAGCATGGTGTTGAACACCCATGCCCCGATG CCGCTGCACCCGCCGG
Homology of Contig U35_43158 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |